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AlignACE
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| Who: |
Abigail Manson McGuire Genetics Dept. Harvard Medical School |
|---|---|
| What: | |
| Link/URL: | |
| Updates: |
in 1998? |
| Upcoming events: |
none |
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About AlignACE
The AlignACE website has a collection of predicted transcription factor binding sites based on running scanACE, an algorithm published[1] by the Church lab against the MG1655 genome.
Content
AlignACE has a table with links from the 59 DNA-binding proteins for which they have predicted binding sites by extrapolation from footprinting data. There are also summary tables and the code for scanACE and alignACE can be downloaded via a link to a Church lab website. These programs implement the approach of Berg and von Hippel [2][3]
Using AlignACE
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Add links to additional pages describing success stories here.
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Technology
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Discussion
References
- ↑ Robison K et al. (1998) A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome. J Mol Biol 284: 241-54 PubMed EcoliWiki page
- ↑ Berg OG & von Hippel PH (1988) Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor protein to recognition sites. J Mol Biol 200: 709-23 PubMed EcoliWiki page
- ↑ Berg OG & von Hippel PH (1987) Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. J Mol Biol 193: 723-50 PubMed EcoliWiki page
