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Category:E. coli Databases
From EcoliWiki
A large number of online databases and resources exist for information about E. coli. EcoliWiki pages in this category are data resources that are primarily about E. coli' or E. coli and closely related bacteria, phage, or mobile genetic elements.
The table below summarizes what kinds of information is present in different resource, including some that are not primarily about E. coli (e.g. NCBI, UniProt). You can help EcoliWiki by updating this table, and adding [[Category:E. coli Databases]] to appropriate databases in Category:Databases or creating new database pages in EcoliWiki.
| Database | Content | Documentation |
|---|---|---|
| AlignACE | Matrices which search for additional binding sites in the E. coli genomic sequence. | EcoliWiki page |
| ASAP | Comprehensive genome information for several enteric bacteria with community annotation. | EcoliWiki page |
| Bacteriome | An integrated protein interaction database for E. coli. Bacteriome features a high quality functional interaction dataset of E. coli proteins togther with experimental datasets generated through tandem affinity purification screens. | EcoliWiki page |
| ColiBASE | A database for comparative genome analysis of Enterobactericaiae. | EcoliWiki page |
| Colibri | Provides a complete dataset of DNA and protein sequences derived from the paradigm strain E. coli K-12, linked to the relevant annotations and functional assignments. | EcoliWiki page |
| CyberCell | Collection of detailed enzymatic, biological, chemical, genetic, and molecular biological data about E. coli K-12 MG1655. | EcoliWiki page |
| E. coli Database Collection (ECDC) | Information regarding the entire E.coli K12 chromosome | EcoliWiki page |
| E. coli Entry Point | E. coli functional annotation | EcoliWiki page |
| E. coli Genetic Stock Center (CGSC) | Coli Genetic Stock Center; strains and genetic information | EcoliWiki page |
| E. coli Genome Project at UW-Madison | Annotations of the E. coli K-12 genome and its annotations. Creating knockouts of every gene, clone of every ORF, and extensive gene expression under varying physiological conditions. | EcoliWiki page |
| E. coli Reference Center | Largest repository for environmental E. coli strains in America. | EcoliWiki page |
| EchoBASE | Curated experimental and bioinformatic information about E. coli genes and gene products | EcoliWiki page |
| EcoCyc | Comprehensive database of E. coli molecular components | EcoliWiki page |
| EcoGene | EcoGene, comprehensive data resource for E. coli | EcoliWiki page |
| EcoliHub | Comprehensive data resource for E. coli K-12 and its phage, plasmids, and mobile genetic elements. | EcoliWiki page |
| EcoliWiki | Wiki-based community annotation for ''E. coli'' K-12, as part of [http://ecolihub.org EcoliHub] | EcoliWiki page |
| EcoSal | Review articles on topics related to E. coli and Salmonella | EcoliWiki page |
| ERIC | Enteropathogen Resource Integration Center | EcoliWiki page |
| GenExpDB | ''E. coli'' Gene Expression Database | EcoliWiki page |
| GenoBase | Public repository for Sequence Information, Proteome, Transcriptome, Bioinformatics, and Knowledge based on literature concerning E. coli. | EcoliWiki page |
| GenProtEC | Functions encoded by the Escherichia coli K-12 | EcoliWiki page |
| PEC | Profiling ''E. coli'' Chromosome PEC focuses on gene function | EcoliWiki page |
References
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Pages in category "E. coli Databases"
The following 22 pages are in the current category.
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