PortEco logo

Category:RNA polymerase tracks

From EcoliWiki
Jump to: navigation, search

Tracks for ChIP-chip, ChIP-seq and other probes of RNA polymerase locations

Check all strain experiment Analyte Reference Variable Conditions Notes Links

MG1655

ChIP-chip

RNAP

PMID:16109958[1]

Track is for both strands.

MG1655

ChIP-chip

RNAP

PMID:17164287[2]

MG1655

ChIP-chip

RNAP

PMID:19150431[3]

MG1655

ChIP-chip

RpoD (Sigma70)

PMID:19150431[3]

MG1655

ChIP-chip

RpoC RNAP beta prime

PMID:19706412[4]

RNAP in response to the Rho-specific inhibitor bicyclomycin (BCM)

MG1655

ChIP-chip

RpoB RNAP beta

PMID:19706412[4]

RNAP in response to the Rho-specific inhibitor bicyclomycin (BCM)

MG1655

ChIP-chip

RpoB RNAP beta

PMID:19706412[4]

Untreated

MG1655

ChIP-chip

RpoC RNAP beta prime

PMID:19706412[4]

Untreated

MG1655

ChIP-chip

RNAP

PMID:20689753[5]

dnaC(ts) at 30°C for 1 hour; shifted back to 30°C for 6 min; synchronized initiation of replication

MG1655

ChIP-seq

RNAP

PMID:21097887[6]

Deletion Fis mid-exponential phase, deletion Hns mid-exponential phase, wildtype mid-exponential phase.

References

See Help:References for how to manage references in EcoliWiki.
  1. Herring, CD et al. (2005) Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays. J. Bacteriol. 187 6166-74 PubMed EcoliWiki page
  2. Grainger, DC et al. (2007) Transcription factor distribution in Escherichia coli: studies with FNR protein. Nucleic Acids Res. 35 269-78 PubMed EcoliWiki page
  3. 3.0 3.1 Mooney, RA et al. (2009) Regulator trafficking on bacterial transcription units in vivo. Mol. Cell 33 97-108 PubMed EcoliWiki page
  4. 4.0 4.1 4.2 4.3 Peters, JM et al. (2009) Rho directs widespread termination of intragenic and stable RNA transcription. Proc. Natl. Acad. Sci. U.S.A. 106 15406-11 PubMed EcoliWiki page
  5. Sánchez-Romero, MA et al. (2010) Dynamic distribution of seqa protein across the chromosome of escherichia coli K-12. MBio 1 PubMed EcoliWiki page
  6. Kahramanoglou, C et al. (2011) Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli. Nucleic Acids Res. 39 2073-91 PubMed EcoliWiki page

Pages in category "RNA polymerase tracks"

The following 6 pages are in this category, out of 6 total.