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FAMSBASE
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| FAMSBASE | |
| Who: | Hideaki Umeyama, Kitasato University Mitiko Go, Nagahama Institute of Bio-Science and Technology |
| What: | Protein structure models by homology modeling |
| Where: | FAMSBASE |
| Updates | |
| Upcoming events | n/a |
| Web Services | |
Contents |
About FAMSBASE
Content
FAMSBASE[1] provides automated homology modeling of protein structures.
Using FAMSBASE
FAMSBASE requires a login for full access, but an anonymous public login says that it allows searching for ORFs with 3D models.
Browsing
Following the public login link, many queries take you to a page that asks you to create an account. However, without creating an account, you can view a list of Proteins with FAMSBASE models. This can be restricted to a particular genome by clicking a checkbox for the desired genome. The output gives psiblast scores and links to other FAMSBASE analysis pages (which need a login) and to GTOP. The ones I tested did not link properly to GTOP.
Searching
Usage examples
Add links to additional pages describing success stories here.
Other sites with related content
Technology
Web Services/API
Discussion
References
- ↑ Yamaguchi A et al. (2003) Enlarged FAMSBASE: protein 3D structure models of genome sequences for 41 species. Nucleic Acids Res 31: 463-8 PubMed EcoliWiki page
External Links
FAMSBASE URL: http://daisy.nagahama-i-bio.ac.jp/Famsbase/
