GO Team Annotation Records - EcoliWiki
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GO Team Annotation Records

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Contents

Annotations done August 2008

Gene ProductFunction TermsProcess TermsComponent TermsCuratorMost recent annotation

MdtK

2

AZ

8/1/08

AtpB (subunit a of Fo)

1

1

1

BMK

8/5/08

TasA

1

AZ

8/1/08

check annotation-may be a peptidase

edit table

Annotations done July 2008

Gene ProductFunction TermsProcess TermsComponent TermsCuratorMost recent annotation

GadA

1

GSK

7/3/08

GadB

1

GSK

7/3/08

GabD

1

GSK

7/3/08

AtoD

1

GSK

7/3/08

AdhE

2

BKM

7/3/08

MurA

1

BKM

7/3/08

edit table

Annotations Done June 2008

Gene ProductFunction TermsProcess TermsComponent TermsCuratorMost recent annotation

BacA

2

BKM

6/18/08

DdlA

2

BKM

6/19/08

DdlB

1

BKM

6/19/08

DnaJ

1

AZ

6/18/08

EmtA

1

BKM

6/30/08

FtsI

2

1

1

BKM

6/19/08

FtsN

1

1

BKM

6/18/08

Mpl

1

1

BKM

6/30/08

MraY

1

BKM

6/17/08

MurC

1

BKM

6/17/08

MurE

1

BKM

6/17/08

MurF

1

BKM

6/17/08

MurG

1

BKM

6/17/08

NuoA

1

DAS

6/8/08

PBP1a (MrcA)

1

BKM

6/16/08

PBP1b (MrcB)

2

BKM

6/16/08

PBP5 (DacA)

2

BKM

6/17/08

PcnB

1

BKM

6/16/08

PurA

1

1

AZ

6/18/08

PurF

1

GSK

6/18/08

RpsJ (S10)

1

DAS

6/19/08

TpiA

1

1

DAS

6/18/08

YgaF

1

GSK

6/16/08

edit table

Gene ProductQualifierGO IDGO term nameAspectReferenceAnnotator NameDate

NuoA

Contributes to

GO:0003954

NADH dehydrogenase activity

F

PMID:10482502[1]

DAS

6/8/08

YgaF

GO:0034419

L-2-hydroxyglutarate oxidase activity

F

PMID:18390652[2]

GSK

June 16, 2008

pcnB

GO:0004652

polynucleotide adenylyltransferase activity

F

PMID:10361280[3]

BKM

6/16/08

PBP1a

GO:0009002

serine-type D-Ala-D-Ala carboxypeptidase activity

F

PMID:7006606[4]

BKM

6/16/08

PBP1b

GO:0008955

peptidoglycan glycosyltransferase activity

F

PMID:6389538[5]

BKM

6/16/08

PBP1b

GO:0009002

serine-type D-Ala-D-Ala carboxypeptidase activity

F

PMID:6389538[5]

BKM

6/16/08

MurC

GO:0008763

UDP-N-acetylmuramate-L-alanine ligase activity

F

PMID:7601127[6]

BKM

6/17/08

MurE

GO:0047482

UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase activity

F

PMID:2269304[7]

BKM

6/17/08

MurF

GO:0047480

UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity

F

PMID:2186811[8]

BKM

6/17/08

MraY

GO:0008963

phospho-N-acetylmuramoyl-pentapeptide-transferase activity

F

PMID:1846850[9]

BKM

6/17/08

MurG

GO:0050511

undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity

F

PMID:1649817[10]

BKM

6/17/07

PBP5

GO:0009002

serine-type D-Ala-D-Ala carboxypeptidase activity

F

PMID:368033[11]

BKM

6/17/08

PBP5

GO:0009002

serine-type D-Ala-D-Ala carboxypeptidase activity

F

PMID:1740130[12]

BKM

6/17/08

BacA

GO:0050380

undecaprenyl-diphosphatase activity

F

PMID:15138271[13]

BKM

6/18/08

BacA

GO:0042493

response to drug

P

PMID:8389741[14]

BKM

6/18/08

purF

GO:0004044

amidophosphoribosyltransferase activity

F

PMID:372191[15]

GSK

June 18, 2008

dnaJ

GO:0003756

protein disulfide isomerase activity

F

PMID:7559385[16]

AZ

6-18-2008

TpiA (triose phosphate isomerase)

GO:0006096

glycolysis

P

PMID:11947134[17]

DAS

6/18/08

PurA

GO:0006164

purine nucleotide biosynthetic process

P

PMID:17012394[18]

AZ

6-18-2008

PurA

GO:0004019

adenylosuccinate synthase activity

F

PMID:16981730[19][5]

AZ

6-18-2008

TpiA (triose phosphate isomerase)

GO:0004807

triose-phosphate isomerase activity

F

PMID:6214548[20]

DAS

6/18/08

FtsI

GO:0042493

response to drug

P

PMID:7030331[21]

BKM

6/18/08

FtsI

GO:0008955

peptidoglycan glycosyltransferase activity

F

PMID:6450748[22]

BKM

6/18/08

FtsI

GO:0008955

peptidoglycan glycosyltransferase activity

F

PMID:7030331[21]

BKM

6/18/08

FtsN

GO:0000917

barrier septum formation

P

PMID:8509333[23]

AZ

6-18-2008

FtsN

GO:0005886

plasma membrane

C

PMID:8509333[23]

AZ

6-18-2007

FtsI

GO:0031226

intrinsic to plasma membrane

C

PMID:3881388[24]

BKM

6/19/08

DdlA

GO:0008716

D-alanine-D-alanine ligase activity

F

PMID:1554356[25]

BKM

6/19/08

DdlA

GO:0008716

D-alanine-D-alanine ligase activity

F

PMID:1993184[26]

BKM

6/19/08

DdlB

GO:0008716

D-alanine-D-alanine ligase activity

F

PMID:1993184[26]

BKM

6/19/08

RpsJ (S10)

GO:0022627

cytosolic small ribosomal subunit

C

PMID:4587209[27]

DAS

6/19/08

EmtA

GO:0008932

lytic endotransglycosylase activity

F

PMID:9642199[28]

BKM

6/30/08

Mpl

GO:0016881

acid-amino acid ligase activity

F

PMID:17384195[29]

BKM

6/30/08

Mpl

GO:0005737

cytoplasm

C

PMID:17384195[29]

BKM

6/30/08

edit table

Annotations done July 1-13, 2008

Gene ProductQualifierGO IDGO term nameAspectReferenceAnnotator NameDate

GadA

GO:0004351

glutamate decarboxylase activity

F

PMID:894890[30]

GSK

July 3, 2008

GadB

GO:0004351

glutamate decarboxylase activity

F

PMID:8954890[31]

GSK

July 3, 2008

GabD

GO:0009450

gamma-aminobutyric acid catabolic process

P

PMID:374339[32]

GSK

July 3, 2008

AtoD

GO:0016563

transcription activator activity

F

PMID:2883171[33]

GSK

July 3, 2008

AdhE

GO:0004022

alcohol dehydrogenase activity

F

PMID:6998946[34]

BKM

7/3/08

AdhE

GO:0008774

acetaldehyde dehydrogenase (acetylating) activity

F

PMID:6998946[34]

BKM

7/3/08

MurA

GO:0008760

UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity

F

PMID:1512209[35]

BKM

7/3/08

L (from bacteriophage lambda)

GO:0044423

virion part

C

PMID:5227665[36]

BKM

7/1/08

A (from bacteriophage lambda)

GO:0019028

viral capsid

C

PMID:5227665[36]

BKM

7/1/08

Cro (from bacteriophage lambda)

GO:0016566

specific transcriptional repressor activity

F

PMID:5269249[37]

BKM

7/1/08

LdcA

GO:0004180

carboxypeptidase activity

F

PMID:17384195[29]

BKM

7/1/08

OppA

GO:0006857

oligopeptide transport

P

PMID:3897225[38]

BKM

7/1/08

OppA

GO:0030288

outer membrane-bounded periplasmic space

C

PMID:3897225[38]

BKM

7/1/08

MurA

GO:0008760

UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity

F

PMID:1512209[35]

BKM

7/3/08

Mlt38

GO:0000299

integral to membrane of membrane fraction

C

PMID:8288527[39]

BKM

7/4/08

PBP4

GO:0009002

serine-type D-Ala-D-Ala carboxypeptidase activity

F

PMID:331322[40]

BKM

7/4/08

PBP4

GO:0042493

response to drug

P

PMID:331322[40]

BKM

7/4/08

PBP4

GO:0030288

outer membrane-bounded periplasmic space

C

PMID:331322[40]

BKM

7/4/08

N (from bacteriophage lambda)

GO:0031564

transcription antitermination

P

PMID:4915096[41]

BKM

7/7/08

GroEL

GO:0042963

phage assembly

P

PMID:7015340[42]

BKM

7/7/08

GroES

GO:0042963

phage assembly

P

PMID:7015340[42]

BKM

7/7/08

GroEL

GO:0016887

ATPase activity

F

PMID:379350[43]

BKM

7/7/08

MtgA (Mgt)

GO:0008955

peptidoglycan glycosyltransferase activity

F

PMID:8772200[44]

BKM

7/7/08

MtgA (Mgt)

GO:0000299

integral to membrane of membrane fraction

C

PMID:8772200[44]

BKM

7/7/08

BolA

GO:0006970

response to osmotic stress

P

PMID:12354237[45]

BKM

7/7/08

BolA

GO:0030528

transcription regulator activity

F

PMID:12354237[45]

BKM

7/7/08

AmpC

GO:0042493

response to drug

P

PMID:9324260[46]

BKM

7/7/08

AmpC

GO:0008800

beta-lactamase activity

F

PMID:9324260[46]

BKM

7/7/08

AmpH

GO:0042493

response to drug

P

PMID:9324260[46]

BKM

7/7/08

PBP1-3,PBP5&6

GO:0031225

anchored to membrane

C

PMID:319999[47]

BKM

7/8/08

PBP1-PBP6

GO:0042493

response to drug

P

PMID:319999[47]

BKM

7/8/08

PBP2

GO:0004180

carboxypeptidase activity

F

PMID:6297485[48]

BKM

7/9/08

PBP2

GO:0042493

response to drug

P

PMID:6297485[48]

BKM

7/9/08

RodA

GO:0008360

regulation of cell shape

P

PMID:6451612[49]

BKM

7/11/08

edit table

Annotations done July 14-31, 2008

Gene ProductQualifierGO IDGO term nameAspectReferenceAnnotator NameDate

FolP

GO:0004156

dihydropteroate synthase activity

F

PMID:1522070[50]

BKM

7/14/08

FolP

GO:0005737

cytoplasm

C

PMID:1522070[50]

BKM

7/14/08

FolP

GO:0046656

folic acid biosynthetic process

P

PMID:1522070[50]

BKM

7/14/08

FolC

GO:0004326

tetrahydrofolylpolyglutamate synthase activity

F

PMID:2985605[51]

BKM

7/14/08

FolC

GO:0008841

dihydrofolate synthase activity

F

PMID:2985605[51]

BKM

7/14/08

FolC

GO:0009257

10-formyltetrahydrofolate biosynthetic process

P

PMID:2985605[51]

BKM

7/14/08

FolC

GO:0046656

folic acid biosynthetic process

P

PMID:2985605[51]

BKM

7/14/08

FolC

GO:0005737

cytoplasm

C

PMID:2985605[51]

BKM

7/14/08

FolP

GO:0042493

response to drug

P

PMID:9449266[52]

BKM

7/14/08

FolA

GO:0042493

response to drug

P

PMID:6444603[53]

BKM

7/14/08

FolA

GO:0009257

10-formyltetrahydrofolate biosynthetic process

P

PMID:6444603[53]

BKM

7/14/08

FolA

GO:0004146

dihydrofolate reductase activity

F

PMID:6444603[53]

BKM

7/14/08

FolA

GO:0004146

dihydrofolate reductase activity

F

PMID:6444603[53]

BKM

7/14/08

FolK

GO:0046656

folic acid biosynthetic process

P

PMID:1325970[54]

BKM

7/14/08

FolK

GO:0003848

2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity

F

PMID:1325970[54]

BKM

7/14/08

FolM

GO:0046656

folic acid biosynthetic process

P

PMID:14617668[55]

BKM

7/17/08

FolM

GO:0009257

10-formyltetrahydrofolate biosynthetic process

P

PMID:14617668[55]

BKM

7/17/08

FolM

GO:0004146

dihydrofolate reductase activity

F

PMID:14617668[55]

BKM

7/17/08

GalK

GO:0004335

galactokinase activity

F

PMID:13977183[56]

GSK

July 17, 2008

AllS

GO:0016563

transcription activator activity

F

PMID:12460564[57]

GSK

July 17, 2008

AllS

GO:0045893

positive regulation of transcription, DNA-dependent

P

PMID:12460564[57]

GSK

July 17, 2008

ArgP

GO:0006261

DNA-dependent DNA replication

P

PMID:1733927[58]

GSK

July 17, 2008

Cbl

GO:0006350

transcription

P

PMID:10506196[59]

GSK

July 18, 2008

Cbl

GO:0016563

transcription activator activity

F

PMID:10506196[59]

GSK

July 18, 2008

Cbl

NOT

GO:0006790

sulfur metabolic process

P

PMID:10506196[59]

GSK

July 18, 2008

Cbl

GO:0045883

positive regulation of sulfur utilization

P

PMID:10506196[59]

GSK

July 17, 2008

Cbl

NOT

GO:0019344

cysteine biosynthetic process

P

PMID:10506196[59]

GSK

July 18, 2008

CynR

GO:0016563

transcription activator activity

F

PMID:1592818[60]

GSK

July 18, 2008

CynR

NOT

GO:0006805

xenobiotic metabolic process

P

PMID:8253686[61]

GSK

July 18, 2008

CysB

NOT

GO:0019344

cysteine biosynthetic process

P

GSK

July 18, 2008

CysB

GO:0016564

transcription repressor activity

F

PMID:10506196[59] PMID:6792186[62]

GSK

July 18, 2008

CynR

GO:0016563

transcription activator activity

F

PMID:8253686[61]

GSK

July 18, 2008

CynR

GO:0016564

transcription repressor activity

F

PMID:8253686[61]

GSK

July 18, 2008

R (lambda endolysin)

GO:0003796

lysozyme activity

F

PMID:14047209[63]

BKM

7/22/08

FhuA

GO:0046790

virion binding

F

PMID:4580999[64]

BKM

7/22/08

FhuA

GO:0009279

cell outer membrane

C

PMID:4580999[64]

BKM

7/22/08

FhuA

GO:0015643

toxin binding

F

PMID:4584483[65]

BKM

7/22/08

FhuA

GO:0046790

virion binding

F

PMID:4584483[65]

BKM

7/22/08

FesB

GO:0006826

iron ion transport

P

PMID:150859[66]

BKM

7/22/08

FesB

GO:0008849

enterochelin esterase activity

F

PMID:150859[66]

BKM

7/22/08

FesB

GO:0006826

iron ion transport

P

PMID:4565531[67]

BKM

7/22/08

topB

GO:0003917

DNA topoisomerase type I activity

F

PMID:6326814[68]

AZ

7/22/08

Ffh

GO:0048500

signal recognition particle

C

PMID:1701272[69]

BKM

7/23/08

Ffh

GO:0030529

ribonucleoprotein complex

C

PMID:1701272[69]

BKM

7/23/08

Ffh

GO:0006612

protein targeting to membrane

P

PMID:1331806[70]

BKM

7/23/08

Ffh

GO:0048500

signal recognition particle

C

PMID:1331806[70]

BKM

7/23/08

Ffh

GO:0005525

GTP binding

F

PMID:7612669[71]

BKM

7/23/08

Ffh

GO:0003924

GTPase activity

F

PMID:7612669[71]

BKM

7/23/08

YidC

GO:0032977

membrane insertase activity

F

PMID:10949305[72]

BKM

7/23/08

YidC

GO:0051205

protein insertion into membrane

P

PMID:10949305[72]

BKM

7/23/08

YidC

GO:0016020

membrane

C

PMID:10675323[73]

BKM

7/23/08

YidC

GO:0016021

integral to membrane

C

PMID:10675323[73]

BKm

7/23/08

YidC

GO:0005515

protein binding

F

PMID:10675323[73]

BKm

7/23/08

DsbA

GO:0003756

protein disulfide isomerase activity

F

PMID:1934062[74]

AZ

7-24-2008

DsbC

GO:0006457

protein folding

P

PMID:8168498[75]

AZ

7-25-2008

DsbG

GO:0003756

protein disulfide isomerase activity

F

PMID:9383195[76]

AZ

7-25-2008

RpoE

GO:0016987

sigma factor activity

F

PMID:7889935[77]

AZ

7-25-2008

edit table

July 28, 2008 - August 10, 2008

Gene ProductQualifierGO IDGO term nameAspectReferenceAnnotator NameDate

UbiD

GO:0006744

ubiquinone biosynthetic process

P

PMID:4897112[78]

BKM

7/28/08

UbiD

GO:0008694

3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity

F

PMID:4897112[78]

BKM

7/28/08

UbiF

GO:0006744

ubiquinone biosynthetic process

P

PMID:10802164[79]

BKM

7/28/08

PspD

GO:0005886

plasma membrane

C

PMID:12562786[80]

DAS

7/30/08

UbiF

GO:0008682

2-octoprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase activity

F

PMID:10802164[79]

BKM

7/28/08

alpha of F1 subunit (AtpA)

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

C

PMID:153904[81]

BKM

7/30/08

alpha of F1 subunit (AtpA)

GO:0015986

ATP synthesis coupled proton transport

P

PMID:4256722[82]

BKM

7/30/08

beta of F1 subunit (AtpD)

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

C

PMID:158358[83]

BKM

7/30/08

beta of F1 subunit (AtpD)

GO:0015986

ATP synthesis coupled proton transport

P

PMID:158358[83]

BKM

7/30/08

gamma subunit of F1 complex (AtpG)

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

C

PMID:2863270[84]

BKM

7/31/08

gamma subunit of F1 complex (AtpG)

GO:0015986

ATP synthesis coupled proton transport

P

PMID:146491[85]

BKM

7/31/08

RppH (NudH)

GO:0034353

RNA pyrophosphohydrolase activity

F

PMID:18202662[86]

DAS

7/31/08

RppH (NudH)

GO:0016818

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

F

PMID:18202662[86]

DAS

7/31/08

PspD

GO:0005886

plasma membrane

C

PMID:12562786[80]

DAS

7/30/08

CyaY

GO:0008198

ferrous iron binding

F

PMID:15276847[87]

DAS

7/31/08

CyaY

GO:0008199

ferric iron binding

F

PMID:15276847[87]

DAS

7/31/08

CyaY

GO:0005737

cytoplasm

C

PMID:17650323[88]

DAS

7/31/08

alpha of F1 (AtpA)

Contributes to

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

F

PMID:2863270[84]

BKM

7/31/08

beta of F1 (AtpD)

Contributes to

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

F

PMID:2863270[84]

BKM

7/31/08

gamma of F1 (AtpG)

Contributes to

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

F

PMID:2863270[84]

BKM

7/31/08

delta of F1 (AtpH)

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

C

PMID:6294057[89]

BKM

7/31/08

delta of F1 (AtpH)

GO:0015986

ATP synthesis coupled proton transport

P

PMID:6294057[89]

BKM

7/31/08

delta of F1 (AtpH)

Contributes to

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

F

PMID:2863270[84]

BKM

7/31/08

epsilon of F1 (AtpC)

GO:0045261

proton-transporting ATP synthase complex, catalytic core F(1)

C

PMID:6238948[90]

BKM

7/31/08

epsilon of F1 (AtpC)

GO:0015986

ATP synthesis coupled proton transport

P

PMID:2903163[91]

BKM

7/31/08

epsilon of F1 (AtpC)

Contributes to

GO:0046933

hydrogen ion transporting ATP synthase activity, rotational mechanism

F

PMID:2863270[84]

BKM

7/31/08

alpha of F1 (AtpA)

GO:0005524

ATP binding

F

PMID:6449513[92]

BKM

7/31/08

YbbN

GO:0003756

protein disulfide isomerase activity

F

PMID:16563353[93]

AZ

7-31-2008

YbbN

GO:0051082

unfolded protein binding

F

PMID:16563353[93]

AZ

7-31-2008

CheY

GO:0006473

protein amino acid acetylation

P

PMID:16630631[94]

AZ

7-31-2008

Pgm

GO:0004614

phosphoglucomutase activity

F

PMID:8083177[95]

AZ

7-31-2008

DnaA

GO:0006261

DNA-dependent DNA replication

P

PMID:2839499[96]

AZ

7-31-2008

MvrC

GO:0042493

response to drug

P

PMID:1320256[97]

AZ

7-31-2008

MvrA

GO:0042493

response to drug

P

PMID:2834327[98]

AZ

7-31-2008

MdtK

GO:0015559

multidrug efflux pump activity

F

PMID:18591276[99]

AZ

8-1-2008

TesA (aka ApeA)

GO:0006508

proteolysis

P

PMID:8432696[100]

AZ

8-1-2008 Review annotation, may be a peptidase

ArsA - plasmid gene

GO:0015446

arsenite transmembrane-transporting ATPase activity

F

PMID:2449436[101]

AZ

8-1-2008

a of Fo (AtpB)

GO:0016021

integral to membrane

C

PMID:2863271[102]

BKM

8/5/08

a of Fo (AtpB)

GO:0015986

ATP synthesis coupled proton transport

P

PMID:2863271[102]

BKM

8/5/08

a of Fo (AtpB)

Contributes to

GO:0046961

hydrogen ion transporting ATPase activity, rotational mechanism

F

PMID:2863271[102]

BKM

8/5/08

b of Fo (AtpF)

GO:0031225

anchored to membrane

C

PMID:2863271[102]

BKM

8/5/08

b of Fo (AtpF)

GO:0015986

ATP synthesis coupled proton transport

P

PMID:2863271[102]

BKM

8/5/08

b of Fo (AtpF)

Contributes to

GO:0046961

hydrogen ion transporting ATPase activity, rotational mechanism

F

PMID:2863271[102]

BKM

8/5/08

c of Fo (AtpE)

GO:0016021

integral to membrane

C

PMID:2863271[102]

BKM

8/5/08

c of Fo (AtpE)

GO:0015986

ATP synthesis coupled proton transport

P

PMID:2863271[102]

BKM

8/5/08

c of Fo (AtpE)

Contributes to

GO:0046961

hydrogen ion transporting ATPase activity, rotational mechanism

F

PMID:2863271[102]

BKM

8/5/08

a of Fo (AtpB)

GO:0045263

proton-transporting ATP synthase complex, coupling factor F(o)

C

PMID:6460031[103]

BKM

8/5/08

b of Fo (AtpF)

GO:0045263

proton-transporting ATP synthase complex, coupling factor F(o)

C

PMID:6460031[103]

BKM

8/5/08

c of Fo (AtpE)

GO:0045263

proton-transporting ATP synthase complex, coupling factor F(o)

C

PMID:6460031[103]

BKM

8/5/08

GlgP

GO:0005737

cytoplasm

C

PMID:3047129[104]

BKM

8/5/08

GlgP