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Genome Browsers

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PortEco provides genome browsers for E. coli, B. subtilis, plasmids, phage, and mobile elements. We curate and provide custom tracks for available datasets, such as alternative annotations, ChIP experiments, and mutations.

The tables below also provide links to relevant genome browsers at other sites.

Contents

E. coli

Genome Links Notes

ATCC_8739

BL21

BL21_DE3

BL21_Gold_DE3

BW2952

DH1

DH10B

E_coli_W

MDS42

MG1655

The PortEco Gbrowse and Jbrowse are currently using version 2 of the MG1655 sequence. Version 3 is the current version at NCBI and EcoGene

REL606

W3110


B. subtilis

Genome Links Notes

subtilis_168


Bacteriophage

Genome Links Notes

bacteriophage_HK022

bacteriophage_HK97

bacteriophage_M13

bacteriophage_MS2

bacteriophage_Mu

bacteriophage_N15

bacteriophage_N4

bacteriophage_P1

bacteriophage_P2

bacteriophage_P22

bacteriophage_P4

bacteriophage_PRD1

bacteriophage_Qbeta

bacteriophage_T1

bacteriophage_T3

bacteriophage_T4

bacteriophage_T5

bacteriophage_T7

bacteriophage_f1

bacteriophage_lambda

bacteriophage_phiX174


Plasmids

Plasmid maps provided in the porteco genome browser are for systems used for studying plasmid biology. We also have a large number of EcoliWiki pages for plasmids, including many cloning vectors, with graphical maps.

Genome Links Notes

plasmid_ColE1

plasmid_F

plasmid_R100

plasmid_RK2


Mobile elements

Genome Links Notes

Transposon_GammaDelta

Transposon_Tn10

Transposon_Tn1681

Transposon_Tn3

Transposon_Tn5

Transposon_Tn7

Transposon_Tn9

Transposon_Tn903


See also

References

See Help:References for how to manage references in EcoliWiki.