POPS and POPSCOMP
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Rapid calculation of solvent accessible surface area (SASA) from pdb files
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POPS and POPSCOMP are tools for rapid calculation of solvent accessible surface area (SASA) from pdb files. POPS calculates accessible surface area for the whole protein, residues, or atoms. POPSCOMP looks at the change in ASA for all pairwise combinations of molecules in the structure.
POPS and POPSCOMP can be run via a web interface at the wiki of the Division of Mathematical Biology at NIMR
Hardware/Software requirements, if applicable
See Help:References for how to manage references in EcoliWiki.
- Cavallo, L et al. (2003) POPS: A fast algorithm for solvent accessible surface areas at atomic and residue level. Nucleic Acids Res. 31 3364-6 PubMed EcoliWiki page
- Kleinjung, J & Fraternali, F (2005) POPSCOMP: an automated interaction analysis of biomolecular complexes. Nucleic Acids Res. 33 W342-6 PubMed EcoliWiki page