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adk:Gene
From EcoliWiki
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
| Standard name |
adk |
|---|---|
| Mnemonic | |
| Synonyms |
ECK0468, b0474, JW0463, dnaW, plsA[1] |
| edit table | |
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
Notes
dnaW and adk were shown to be allelic by Henson an Walker[2].
Location(s) and DNA Sequence
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
10.7 minutes |
MG1655: 496399..497043 | ||
|
W3110 |
|
W3110: 496399..497043 | ||
| edit table |
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
Notes
Sequence Features
| Feature type | Location | Description |
|---|---|---|
| edit table |
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
Notes
Alleles and Phenotypes
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
adk-15(ts) |
temperature sensitive | ||||||
|
adk-2(ts) |
temperature sensitive | ||||||
|
adk-31(ts) |
temperature sensitive | ||||||
|
adk-3(ts) |
temperature sensitive | ||||||
|
adk-9(ts) |
temperature sensitive |
| |||||
| edit table |
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
Notes
Genetic Resources
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW0463 |
Plasmid clone |
Status:Clone OK Primer 1:GCCCGTATCATTCTGCTTGGCGC Primer 2:CCGCCGAGGATTTTTTCCAGATC | |
|
Linked marker |
est. P1 cotransduction: 22% [5] Synonyms:zba-3054::Tn10 | ||
|
Linked marker |
est. P1 cotransduction: 86% [5] Synonyms:zbb-30-55::TnlO, zba-3055::Tn10 | ||
| edit table |
See Help:Gene_resources for help entering information into the Genetic Resources table.
Notes
Accessions in Other Databases
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Henson JM et al. (1982) The Escherichia coli dnaW mutation is an allele of the adk gene. Mol Gen Genet 186: 488-92 PubMed EcoliWiki page
- ↑ Kitagawa M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive): Unique Resources for Biological Research. DNA Res 12: 291-9 PubMed EcoliWiki page
- ↑ 4.0 4.1 CGSC: The Coli Genetics Stock Center
- ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
