EcoliHub logo

Try the new EcoliHub and let us know what you'd like to see.

ahpC:Gene Product(s)

From EcoliWiki

Jump to: navigation, search


Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

AhpC

Synonyms

alkyl hydroperoxide reductase, C22 subunit[1], B0605[2][1], AhpC[2][1], Ssi8[2][1]

Product description

AhpC component[2][3];

Component of alkylhydroperoxide reductase[3]

Alkyl hydroperoxide reductase, subunit C; reduced by the AhpF subunit[4]

EC number (for enzymes)

Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

QualifierGO IDGO term nameReference(s)Evidence Codewith/fromAspectNotesStatus
GO:0005737

cytoplasm

PMID:7499381[5]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc [6]

complete

GO:0004601

peroxidase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0575

F

Seeded from EcoCyc 12.5 [7]

complete

GO:0016209

antioxidant activity

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000866
SP_KW:KW-0049

F

Seeded from EcoCyc 12.5 [7]

complete

GO:0016491

oxidoreductase activity

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000866
SP_KW:KW-0560

F

Seeded from EcoCyc [6]

complete

GO:0051920

peroxiredoxin activity

GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.11.1.15

F

Seeded from EcoCyc 12.5 [7]

complete

GO:0005624

membrane fraction

PMID:16858726[8]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc [6]

complete

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

required field missing

GO:0005739

mitochondrion

PMID:16858726[8]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc [6]

complete

GO:0005829

cytosol

PMID:16858726[8]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc [6]

complete

GO:0045454

cell redox homeostasis

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017936

P

Seeded from EcoCyc [6]

complete

GO:0055114

oxidation reduction

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR017559
SP_KW:KW-0560

P

Seeded from EcoCyc [6]

complete

GO:0004601

peroxidase activity

PMID:11717276[9]

IGI: Inferred from Genetic Interaction

EcoliWiki:katG

F

complete

GO:0005737

cytoplasm

PMID:7499381[5]

IDA: Inferred from Direct Assay

C

complete

GO:0016209

antioxidant activity

PMID:7644465[10]

IMP: Inferred from Mutant Phenotype

F

complete

GO:0016684

oxidoreductase activity, acting on peroxide as acceptor

PMID:7644465[10]

IMP: Inferred from Mutant Phenotype

F

complete

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner TypePartnerNotesReferencesEvidence

Protein

Subunits of alkylhydroperoxide reductase

could be indirect

Protein

rhsC

PMID:16606699[11]

Experiment(s):EBI-1137372

Protein

lacZ

PMID:16606699[11]

Experiment(s):EBI-1137372

Protein

rhsE

PMID:16606699[11]

Experiment(s):EBI-1137372

Protein

rtcB

PMID:16606699[11]

Experiment(s):EBI-1137372

Protein

recB

PMID:16606699[11]

Experiment(s):EBI-1137372

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

CompartmentDescriptionEvidenceSourceNotes

cytoplasm


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc

MSLINTKIKP FKNQAFKNGE FIEITEKDTE GRWSVFFFYP ADFTFVCPTE LGDVADHYEE
LQKLGVDVYA VSTDTHFTHK AWHSSSETIA KIKYAMIGDP TGALTRNFDN MREDEGLADR
ATFVVDPQGI IQAIEVTAEG IGRDASDLLR KIKAAQYVAS HPGEVCPAKW KEGEATLAPS
LDLVGKI
Length

187

Mol. Wt

20.761 kDa

pI

5.0 (calculated)

Extinction coefficient

23,950 - 24,200 (calc based on 5 Y, 3 W, and 2 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

TypeResiduesDescriptionNotesReferences

Initiator Methionine

1

Removed

UniProt:P0AE08

Modification Site

84

phosphorylation site at S84

probability greater than 75%

PMID:17938405[12]

Modification Site

146

phosphorylation site at S146

probability greater than 75%

PMID:17938405[12]


rectanglerectanglerectanglemotifs

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures
Models

View models at:

Structure figures

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource typeSourceNotes/Reference

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11384-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P0AE08

UniProt (EcoliWiki Page)

UniProt:P0AE08

PFAM (EcoliWiki Page)

PFAM:PF00578

RefSeq (EcoliWiki Page)

RefSeq:NP_415138


Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. 5.0 5.1 Cha MK et al. (1995) Thioredoxin-linked "thiol peroxidase" from periplasmic space of Escherichia coli. J Biol Chem 270: 28635-41 PubMed EcoliWiki page
  6. 6.0 6.1 6.2 6.3 6.4 6.5 6.6 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  7. 7.0 7.1 7.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  8. 8.0 8.1 8.2 Lasserre JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27: 3306-21 PubMed EcoliWiki page
  9. Seaver LC & Imlay JA (2001) Alkyl hydroperoxide reductase is the primary scavenger of endogenous hydrogen peroxide in Escherichia coli. J Bacteriol 183: 7173-81 PubMed EcoliWiki page
  10. 10.0 10.1 Ferrante AA et al. (1995) Cloning of an organic solvent-resistance gene in Escherichia coli: the unexpected role of alkylhydroperoxide reductase. Proc Natl Acad Sci U S A 92: 7617-21 PubMed EcoliWiki page
  11. 11.0 11.1 11.2 11.3 11.4 Arifuzzaman M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res 16: 686-91 PubMed EcoliWiki page
  12. 12.0 12.1 Macek B et al. (2007) Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation. Mol Cell Proteomics PubMed EcoliWiki page

Categories

[back to top]

Personal tools
page contributors