E. coli is indeed the coolest thing on the planet - Carl Zimmer
aidB:Gene Product(s)
From EcoliWiki
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
| Standard name |
AidB product |
|---|---|
| Synonyms |
isovaleryl CoA dehydrogenase product[1], B4187 product[2][1], AidB product[2][1] |
| Product description | |
| EC number (for enzymes) |
|
| edit table |
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0016627 |
oxidoreductase activity, acting on the CH-CH group of donors |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0016491 |
oxidoreductase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0008152 |
metabolic process |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0003995 |
acyl-CoA dehydrogenase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0003677 |
DNA binding |
IPI: Inferred from Physical Interaction |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0006281 |
DNA repair |
NR |
P |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0006307 |
DNA dealkylation |
NR |
P |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0006950 |
response to stress |
IEP: Inferred from Expression Pattern |
P |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0008470 |
isovaleryl-CoA dehydrogenase activity |
IDA: Inferred from Direct Assay |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| edit table |
Interactions
| Partner Type | Partner | Notes | References |
|---|---|---|---|
| edit table |
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Notes
Localization
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Notes
Structure and Physical Properties
Physical Properties
| Sequence |
MEGDTVHWQT HTVFNQPIPL NNSNLYLSDG ALCEAVTREG AGWDSDFLAS IGQQLGTAES LELGRLANVN PPELLRYDAQ GRRLDDVRFH PAWHLLMQAL CTNRVHNLAW EEDARSGAFV ARAARFMLHA QVEAGSLCPI TMTFAATPLL LQMLPAPFQD WTTPLLSDRY DSHLLPGGQK RGLLIGMGMT EKQGGSDVMS NTTRAERLED GSYRLVGHKW FFSVPQSDAH LVLAQTAGGL SCFFVPRFLP DGQRNAIRLE RLKDKLGNRS NASCEVEFQD AIGWLLGLEG EGIRLILKMG GMTRFDCALG SHAMMRRAFS LAIYHAHQRH VFGNPLIQQP LMRHVLSRMA LQLEGQTALL FRLARAWDRR ADAKEALWAR LFTPAAKFVI CKRGMPFVAE AMEVLGGIGY CEESELPRLY REMPVNSIWE GSGNIMCLDV LRVLNKQAGV YDLLSEAFVE VKGQDRYFDR AVRRLQQQLR KPAEELGREI THQLFLLGCG AQMLKYASPP MAQAWCQVML DTRGGVRLSE QIQNDLLLRA TGGVCV |
|---|---|
| Mol. Wt |
60.59 kDa (calc) [2] |
| pI | |
| Extinction coefficient |
75400 - 76900 (calc based on 10 Y, 11 W, and 12 C residues) |
| edit table |
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Domains/Motifs/Modification Sites
| Type | Residues | Description | Notes |
|---|---|---|---|
| edit table |
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
Structure
| Structures |
|
|---|---|
| Models |
View models at: |
| edit table |
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
Notes
Gene Product Resources
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Notes
Accessions in Other Databases
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 5.0 5.1 5.2 5.3 Rohankhedkar MS et al. (2006) The AidB component of the Escherichia coli adaptive response to alkylating agents is a flavin-containing, DNA-binding protein. J Bacteriol 188: 223-30 PubMed EcoliWiki page
- ↑ Volkert MR & Nguyen DC (1984) Induction of specific Escherichia coli genes by sublethal treatments with alkylating agents. Proc Natl Acad Sci U S A 81: 4110-4 PubMed EcoliWiki page
Categories
Categories: GO:0016627 ! oxidoreductase activity, acting on the CH-CH group of donors | GO:0016491 ! oxidoreductase activity | GO:0008152 ! metabolic process | GO:0003995 ! acyl-CoA dehydrogenase activity | GO:0003677 ! DNA binding | GO:0006281 ! DNA repair | GO:0006307 ! DNA dealkylation | GO:0006950 ! response to stress | GO:0008470 ! isovaleryl-CoA dehydrogenase activity | Proteins
