E. coli is indeed the coolest thing on the planet - Carl Zimmer
alsR:Gene Product(s)
From EcoliWiki
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
| Standard name |
RpiR product |
|---|---|
| Synonyms | |
| Product description |
Txnl repressor for als operon and rpiB[3] |
| EC number (for enzymes) |
|
| edit table |
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0003700 |
transcription factor activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0005529 |
sugar binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0003677 |
DNA binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0005975 |
carbohydrate metabolic process |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0006350 |
transcription |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0006355 |
regulation of transcription, DNA-dependent |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0006350 |
transcription |
IEP: Inferred from Expression Pattern |
P |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0006350 |
transcription |
IEP: Inferred from Expression Pattern |
P |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0016564 |
transcription repressor activity |
IEP: Inferred from Expression Pattern |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0016564 |
transcription repressor activity |
IEP: Inferred from Expression Pattern |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0009052 |
pentose-phosphate shunt, non-oxidative branch |
P |
Seeded from EcoCyc 11.1[7]. |
required fields missing | ||||
| GO:0005737 |
cytoplasm |
C |
Seeded from EcoCyc 11.1[7]. |
required fields missing | ||||
| GO:0016052 |
carbohydrate catabolic process |
P |
Seeded from EcoCyc 11.1[7]. |
required fields missing | ||||
| edit table |
Interactions
| Partner Type | Partner | Notes | References |
|---|---|---|---|
| edit table |
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Notes
Localization
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Notes
Structure and Physical Properties
Physical Properties
| Sequence |
MASSIQGQEN VMSQSEFDSA LPNGIGLAPY LRMKQEGMTE NESRIVEWLL KPGNLSCAPA IKDVAEALAV SEAMIVKVSK LLGFSGFRNL RSALEDYFSQ SEQVLPSELA FDEAPQDVVN KVFNITLRTI MEGQSIVNVD EIHRAARFFY QARQRDLYGA GGSNAICADV QHKFLRIGVR CQAYPDAHIM MMSASLLQEG DVVLVVTHSG RTSDVKAAVE LAKKNGAKII CITHSYHSPI AKLADYIICS PAPETPLLGR NASARILQLT LLDAFFVSVA QLNIEQANIN MQKTGAIVDF FSPGALK |
|---|---|
| Mol. Wt |
32.36 kDa (calc) [1] |
| pI | |
| Extinction coefficient |
15930 - 16555 (calc based on 7 Y, 1 W, and 5 C residues) |
| edit table |
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Domains/Motifs/Modification Sites
| Type | Residues | Description | Notes |
|---|---|---|---|
|
Domain |
14 - 90 | ||
|
Domain |
135 - 296 | ||
| edit table |
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
Structure
| Structures |
|
|---|---|
| Models |
View models at: |
| edit table |
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
Notes
Gene Product Resources
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Notes
Accessions in Other Databases
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 2.0 2.1 2.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑
- ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 5.0 5.1 Sorensen KI & Hove-Jensen B (1996) Ribose catabolism of Escherichia coli: characterization of the rpiB gene encoding ribose phosphate isomerase B and of the rpiR gene, which is involved in regulation of rpiB expression. J Bacteriol 178: 1003-11 PubMed EcoliWiki page
- ↑ 6.0 6.1 Kim C et al. (1997) The D-allose operon of Escherichia coli K-12. J Bacteriol 179: 7631-7 PubMed EcoliWiki page
- ↑ 7.0 7.1 7.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
Categories
Categories: GO:0003700 ! transcription factor activity | GO:0005529 ! sugar binding | GO:0003677 ! DNA binding | GO:0005975 ! carbohydrate metabolic process | GO:0006350 ! transcription | GO:0006355 ! regulation of transcription, DNA-dependent | GO:0016564 ! transcription repressor activity | GO:0009052 ! pentose-phosphate shunt, non-oxidative branch | GO:0005737 ! cytoplasm | GO:0016052 ! carbohydrate catabolic process | Proteins
