ampD:Gene Product(s) - EcoliWiki
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ampD:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

AmpD

Synonyms

N-acetyl-anhydromuranmyl-L-alanine amidase[1], B0110[2][1], AmpD[2][1]

Product description

N-acetyl-anhydromuramyl-L-alanine-amidase[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

QualifierGO IDGO term nameReference(s)Evidence Codewith/fromAspectNotesStatus
GO:0005737

cytoplasm

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0007047

cell wall organization

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0961

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0008745

N-acetylmuramoyl-L-alanine amidase activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002502

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0009253

peptidoglycan catabolic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002502

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0016787

hydrolase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0000270

peptidoglycan metabolic process

P

Seeded from Riley et al 2006 [1].

required fields missing

GO:0009254

peptidoglycan turnover

P

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions

Partner TypePartnerNotesReferences
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Notes

Localization

CompartmentDescriptionEvidenceNotes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MLLEQGWLVG ARRVPSPHYD CRPDDETPTL LVVHNISLPP GEFGGPWIDA LFTGTIDPQA
HPFFAEIAHL RVSAHCLIRR DGEIVQYVPF DKRAWHAGVS QYQGRERCND FSIGIELEGT
DTLAYTDAQY QQLAAVTRAL IDCYPDIAKN MTGHCDIAPD RKTDPGPAFD WARFRVLVSK ETT
Mol. Wt

20.54 kDa (calc) [2]

pI
Extinction coefficient

30940 - 31565 (calc based on 6 Y, 4 W, and 5 C residues)

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Domains/Motifs/Modification Sites

TypeResiduesDescriptionNotes
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Structure

Structures
  • Representative homolog:
    1J3G|A (Citrobacter freundii)
    2-179 of 183 residues (E-value: 2.4e-88) (Percent Identity: 88.76)
  • View all other structures.
Models

View models at:

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Notes

Gene Product Resources

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Resource typeSourceNotes/Reference
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Notes

Accessions in Other Databases

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DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10041-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P13016

UniProt (EcoliWiki Page)

UniProt:P13016

PFAM (EcoliWiki Page)

PFAM:PF01510

RefSeq (EcoliWiki Page)

RefSeq:NP_414652

ModBase (EcoliWiki Page)

ModBase:P13016


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Notes

Links

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NameURLComments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 4.3 4.4 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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