PortEco logo

apaG:Gene

From EcoliWiki
Jump to: navigation, search


Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

apaG

Mnemonic

Adenine-tetraPhosphate-adenine

Synonyms

ECK0051, b0050, JW0049, temP[1], corD, temP

Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

BW2952

NC_012759: 51229..51606


MG1655

1.1 minutes 

MG1655: 51606..51229


REL606

NC_012967: 55801..55424


W3110

 

W3110: 51606..51229


DH10B

DH10B: 51606..51229


Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

apaG(del) (Keio:JW0049)

deletion

deletion

PMID:16738554[2]

Shigen

apaG762(del)::FRT

Mutagenesis rate

Decreased stress-induced mutagenesis (SIM) phenotype.

PMID:23224554[3]

Parental Strain: SMR4562 Experimental Strain: SMR12241

Mutation was comparatively weak with decrease only happening to 33-67% of population.

Notes

Genetic Interactions

[back to top]


Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0049

Plasmid clone

Shigen

PMID:16769691[4]

Status:Clone OK

Primer 1:GCCATCAATTCGCCCCGAGTGTG

Primer 2:CCATGAATGAGTGTGGGAACGGC

2F7

Kohara Phage

Genobase

PMID:3038334[5]

4A3

Kohara Phage

Genobase

PMID:3038334[5]

8D2

Kohara Phage

Genobase

PMID:3038334[5]

carB96::Tn10

Linked marker

CAG12093 = CGSC7322[6]

est. P1 cotransduction: 51% [7]
Synonyms:car-96::Tn10

leuO3051::Tn10

Linked marker

CAG12095 = CGSC7324[6]

est. P1 cotransduction: 28% [7]
Synonyms:zab-3051::Tn10 nnnThe start of leuO was reannotated by Riley et al. (2006).

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10047

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10047

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000043

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:944772

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0045

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000169

Escherichia coli str. K-12 substr. MG1655

Notes

Links

[back to top]



<protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed EcoliWiki page
  3. Al Mamun, AA et al. (2012) Identity and function of a large gene network underlying mutagenic repair of DNA breaks. Science 338 1344-8 PubMed EcoliWiki page
  4. Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed EcoliWiki page
  5. 5.0 5.1 5.2 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed EcoliWiki page
  6. 6.0 6.1 CGSC: The Coli Genetics Stock Center
  7. 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories