PortEco logo

araH:Gene

From EcoliWiki
Jump to: navigation, search


Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

araH

Mnemonic

Arabinose

Synonyms

ECK1897, b4460, JW1887, b1898 (obsolete), b1899 (obsolete)[1][2]

Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

42.69 minutes 

MG1655: 1981567..1980578


REL606

NC_012967: 1961537..1960548


BW2952

NC_012759: 1873061..1874047


W3110

 

W3110: 1985680..1984691


DH10B

DH10B: 2072575..2071586


Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔaraH (Keio:JW1887)

deletion

deletion

PMID:16738554[3]

Shigen
CGSC9569[4]

ΔaraH749::kan

PMID:16738554[3]

CGSC:100030


Notes

Genetic Interactions

[back to top]


Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW1887

Plasmid clone

Shigen

PMID:16769691[5]

Status:Clone OK

Primer 1:GCCATGTCTTCTGTTTCTACATC

Primer 2:CCGACAGTGCGTTTCGCTTTTTG

7F11

Kohara Phage

Genobase

PMID:3038334[6]

18A9

Kohara Phage

Genobase

PMID:3038334[6]

16B12

Kohara Phage

Genobase

PMID:3038334[6]

eda-51::Tn10

Linked marker

CAG18486 = CGSC7392[4]

est. P1 cotransduction: 9% [7]

uvrC279::Tn10

Linked marker

CAG12156 = CGSC7394[4]

est. P1 cotransduction: 71% [7]

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10059

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10059

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000055

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948923

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0057

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0174093

Escherichia coli str. K-12 substr. MG1655

Notes

Links

[back to top]



<protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed EcoliWiki page
  4. 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed EcoliWiki page
  6. 6.0 6.1 6.2 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed EcoliWiki page
  7. 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories