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aspT:On One Page

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Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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See Help:Quickview for help with entering information in the Quickview table.

Standard Name

aspT

Gene Synonym(s)

ECK3754, b3760, JWR0086, tasC[1]

Product Desc.


Product Synonyms(s)

tRNA-Asp(GUC) (Aspartate tRNA1)[1]

Function from GO
Knock-Out Phenotype
Regulation/Expression

transcription unit(s):

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(aspT)    Textpresso(aspT)

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

aspT

Mnemonic

Aspartate

Synonyms

ECK3754, b3760, JWR0086, tasC[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

StrainMap locationGenome coordinatesGenome browsersSequence links

MG1655

85.03 minutes 

MG1655: 3944895..3944971
gbrowse_img.php?coord=3944895..3944971&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 3908672..3908748
gbrowse_img.php?coord=3908672..3908748&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 3689809..3689733
gbrowse_img.php?coord=3689733..3689809&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 4043815..4043891
gbrowse_img.php?coord=4043815..4043891&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

BW2952

NC_012759: 3834564..3834640
gbrowse_img.php?coord=3834564..3834640&genome=BW2952&name=NC_012759&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature typeLocationDescription
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

AlleleNt change(s)AA change(s)Phenotype: TypePhenotype: DescriptionReferenceAvailabilityComments
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

ResourceResource TypeSourceNotes/Reference

Plasmid clone

Shigen

PMID:16769691

Status:

Primer 1:

Primer 2:

rbsD296::Tn10

Linked marker

CAG18501 = CGSC7460[2]

est. P1 cotransduction: 59% [3]
Synonyms:zie-296::Tn10

ilvD500::Tn10

Linked marker

CAG18431 = CGSC7462[2]

est. P1 cotransduction: 76% [3]
Synonyms:ilv500::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG30023

EchoBASE (EcoliWiki Page)

EchoBASE:EB4186

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3760

EcoGene (EcoliWiki Page)

EcoGene:EG30023

CGSC (EcoliWiki Page)

CGSC:989


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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

tRNA-Asp(GUC) (Aspartate tRNA1)

Synonyms

tRNA-Asp(GUC) (Aspartate tRNA1)[1]

Product description


EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

QualifierGO IDGO term nameReference(s)Evidence Codewith/fromAspectNotesStatus
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner TypePartnerNotesReferencesEvidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

CompartmentDescriptionEvidenceSourceNotes
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Notes

Structure and Physical Properties

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Physical Properties

Type

tRNA

Sequence 
GGAGCGGUAG UUCAGUCGGU UAGAAUACCU GCCUGUCACG CAGGGGGUCG CGGGUUCGAG
UCCCGUCCGU UCCGCCA
Mol. Wt

25019.83

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Domains/Motifs/Modification Sites See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

TypeResiduesDescriptionNotesReferences
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Image couresy of Rfam


Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures
Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource typeSourceNotes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes
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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

MoleculeOrganism or StrainCellular levelUnitsMediumTemperature °COther (e.g. anaerobic)Growth rateAssay usedNotesReference(s)
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
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Figure courtesy of RegulonDB

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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gbrowse_img.php?coord=3944875..3944915&genome=ecoli&name=MG1655&trackset=Gene+DNA_+Protein&width=400&figure=Nterm&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele NameMutationPhenotypeReference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

TypeReferenceNotes

microarray

GEO Profiles:b3760 (EcoliWiki Page)

NCBI GEO profiles for aspT

microarray

GenExpDB:b3760 (EcoliWiki Page)

Summary of data for aspT from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource NameResource TypeDescriptionSourceNotes
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Notes

Accessions Related to aspT Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG30023

EchoBASE (EcoliWiki Page)

EchoBASE:EB4186

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3760

EcoGene (EcoliWiki Page)

EcoGene:EG30023


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Notes

Links

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Evolution

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Homologs in Other Organisms

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Do-It-Yourself Web Tools

Notes

Families

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DatabaseAccessionNotes

PFAM (EcoliWiki Page)

PFAM:PF00392

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 CGSC: The Coli Genetics Stock Center
  3. ↑ 3.0 3.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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