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bglJ:On One Page

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Standard Name

bglJ

Gene Synonym(s)

ECK4356, b4366, JW5955, yjjR[1]

Product Desc.

BglJ transcriptional regulator[2][3]

Mutation bglJ4 activates silent bgl operon; mutation allows arbutin and salicin transport and utilization[4]

Product Synonyms(s)

DNA-binding transcriptional activator product[1], B4366 product[2][1], YjjR product[2][1], BglJ product[2][1]

Function from GO

Biological Process

Molecular Function

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yjjQ[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(bglJ)    Textpresso(bglJ)

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

bglJ

Mnemonic

beta-Glucoside

Synonyms

ECK4356, b4366, JW5955, yjjR[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

StrainMap locationGenome coordinatesGenome browsersSequence links

MG1655

99.19 minutes 

MG1655: 4602237..4602860
gbrowse_img.php?coord=4602237..4602860&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 4593448..4594071
gbrowse_img.php?coord=4593448..4594071&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 4608894..4609517
gbrowse_img.php?coord=4608894..4609517&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 4648699..4649322
gbrowse_img.php?coord=4648699..4649322&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

BW2952

NC_012759: 4540817..4541344
gbrowse_img.php?coord=4540817..4541344&genome=BW2952&name=NC_012759&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature typeLocationDescription
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

AlleleNt change(s)AA change(s)Phenotype: TypePhenotype: DescriptionReferenceAvailabilityComments

ΔbglJ (Keio:JW5955)

deletion

deletion

PMID:16738554

Shigen


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

ResourceResource TypeSourceNotes/Reference

Plasmid clone

Shigen

PMID:16769691

Status:

Primer 1:

Primer 2:

mdoB202::Tn10

Linked marker

CAG18430 = CGSC7488[5]

est. P1 cotransduction: 74% [6]
Synonyms:zjj-202::Tn10, zji-202::Tn10

thrA34::Tn10

Linked marker

CAG18442 = CGSC7320[5]

est. P1 cotransduction: 21% [6]
Synonyms:thr-34::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:G7948

EchoBASE (EcoliWiki Page)

EchoBASE:EB2479

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b4366

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C5445

EcoGene (EcoliWiki Page)

EcoGene:EG12594

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:BGLJ

ASAP (EcoliWikiPage)

ASAP:ABE-0014324


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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

BglJ product

Synonyms

DNA-binding transcriptional activator product[1], B4366 product[2][1], YjjR product[2][1], BglJ product[2][1]

Product description

BglJ transcriptional regulator[2][3]

Mutation bglJ4 activates silent bgl operon; mutation allows arbutin and salicin transport and utilization[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

QualifierGO IDGO term nameReference(s)Evidence Codewith/fromAspectNotesStatus

GO:0006350

transcription

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc 12.5 [7]

complete

GO:0003677

DNA binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

Seeded from EcoCyc 12.5 [7]

complete

GO:0003700

transcription factor activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000792

F

Seeded from EcoCyc [8]

complete

GO:0005622

intracellular

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000792

C

Seeded from EcoCyc 12.5 [7]

complete

GO:0006355

regulation of transcription, DNA-dependent

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000792
SP_KW:KW-0805

P

Seeded from EcoCyc 12.5 [7]

complete

GO:0043565

sequence-specific DNA binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000792

F

Seeded from EcoCyc [8]

complete

GO:0006350

transcription

PMID:16207917

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc 12.5 [7]

complete

GO:0006350

transcription

PMID:8725214

IEP: Inferred from Expression Pattern

P

Seeded from EcoCyc 12.5 [7]

complete

GO:0006350

transcription

PMID:8725214

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc 12.5 [7]

complete

GO:0016563

transcription activator activity

PMID:16207917

IMP: Inferred from Mutant Phenotype

F

Seeded from EcoCyc 12.5 [7]

complete

GO:0016563

transcription activator activity

PMID:8725214

IEP: Inferred from Expression Pattern

F

Seeded from EcoCyc 12.5 [7]

complete

GO:0016563

transcription activator activity

PMID:8725214

IMP: Inferred from Mutant Phenotype

F

Seeded from EcoCyc 12.5 [7]

complete

GO:0000156

two-component response regulator activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016032

F

Seeded from EcoCyc [8]

complete

GO:0000160

two-component signal transduction system (phosphorelay)

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016032

P

Seeded from EcoCyc [8]

complete

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0016052

carbohydrate catabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner TypePartnerNotesReferencesEvidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

CompartmentDescriptionEvidenceSourceNotes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MEHSRIKKRN VALIEKCVMS SIGIESLFRK FAGNPYKLHT YTSQESFQDA MSRISFAAVI
FSFSAMRSER REGLSCLTEL AIKFPRTRRL VIADDDIEAR LIGSLSPSPL DGVLSKASTL
EIFHQELFLS LNGVRQATDR LNNQWYINQS RTLSPTEREI LRFMSRGYSM TQIAEQLKRN
IKTIRAHKFN VMSKLGVSSD AGLLEAADIL LCMRHCETSN VLHPY
Length

225

Mol. Wt

25.622 kDa

pI

9.8 (calculated)

Extinction coefficient

12,950 - 13,450 (calc based on 5 Y, 1 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

TypeResiduesDescriptionNotesReferences
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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures
Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource typeSourceNotes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:G7948-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P39404

UniProt (EcoliWiki Page)

UniProt:P39404

PFAM (EcoliWiki Page)

PFAM:PF00196

RefSeq (EcoliWiki Page)

RefSeq:NP_418786


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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

MoleculeOrganism or StrainCellular levelUnitsMediumTemperature °COther (e.g. anaerobic)Growth rateAssay usedNotesReference(s)
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

yjjQ

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Figure courtesy of RegulonDB

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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gbrowse_img.php?coord=4602217..4602257&genome=ecoli&name=MG1655&trackset=Gene+DNA_+Protein&width=400&figure=Nterm&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele NameMutationPhenotypeReference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

TypeReferenceNotes

microarray

GEO Profiles:b4366 (EcoliWiki Page)

NCBI GEO profiles for bglJ

microarray

GenExpDB:b4366 (EcoliWiki Page)

Summary of data for bglJ from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource NameResource TypeDescriptionSourceNotes
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Notes

Accessions Related to bglJ Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:G7948

EchoBASE (EcoliWiki Page)

EchoBASE:EB2479

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b4366

EcoGene (EcoliWiki Page)

EcoGene:EG12594


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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

OrganismHomologs (Statistics)Comments

Shigella flexneri

BGLJ

From SHIGELLACYC

E. coli O157

BGLJ

From ECOO157CYC

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Do-It-Yourself Web Tools

Notes

Families

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DatabaseAccessionNotes

PFAM (EcoliWiki Page)

PFAM:PF00196


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  8. ↑ 8.0 8.1 8.2 8.3 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70

Categories

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