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caiC:Gene
From EcoliWiki
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
caiC |
|---|---|
| Mnemonic |
Carnitine inducible |
| Synonyms |
ECK0038, b0037, JW0036, yaaM[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
0.78 minutes |
MG1655: 37839..36271 | ||
|
NC_012967: 42033..40465 | ||||
|
W3110 |
|
W3110: 37839..36271 | ||
|
DH10B: 37839..36271 | ||||
|
NC_012759: 36271..37839 | ||||
| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature type | Location | Description |
|---|---|---|
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
caiCL503LDL |
L503LDL |
(in strain: O44:K74) |
Strain variation; seeded from UniProt:P31552 | ||||
|
caiCR359C |
R359C |
(in strain: B) |
Strain variation; seeded from UniProt:P31552 | ||||
|
caiCI374V |
I374V |
(in strain: O44:K74 and B) |
Strain variation; seeded from UniProt:P31552 | ||||
|
caiCA396V |
A396V |
(in strain: O44:K74) |
Strain variation; seeded from UniProt:P31552 | ||||
|
caiCR408C |
R408C |
(in strain: O44:K74) |
Strain variation; seeded from UniProt:P31552 | ||||
|
caiCD412G |
D412G |
(in strain: O44:K74 and B) |
Strain variation; seeded from UniProt:P31552 | ||||
|
caiCA442T |
A442T |
(in strain: O44:K74 and B) |
Strain variation; seeded from UniProt:P31552 | ||||
|
caiCQ388K |
Q388K |
(in strain: O44:K74 and B) |
Strain variation; seeded from UniProt:P31552 | ||||
|
caiCI328S |
I328S |
(in strain: O44:K74) |
Strain variation; seeded from UniProt:P31552 | ||||
|
caiCV345A |
V345A |
(in strain: O44:K74 and B) |
Strain variation; seeded from UniProt:P31552 | ||||
|
caiCC98R |
C98R |
(in strain: O44:K74) |
Strain variation; seeded from UniProt:P31552 | ||||
|
caiCRA252PR |
RA252PR |
(in strain: O44:K74) |
Strain variation; seeded from UniProt:P31552 | ||||
|
caiCQ286R |
Q286R |
(in strain: O44:K74 and B) |
Strain variation; seeded from UniProt:P31552 | ||||
|
ΔcaiC (Keio:JW0036) |
deletion |
deletion | |||||
|
ΔcaiC750::kan |
| ||||||
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW0036 |
Plasmid clone |
Status:Clone OK Primer 1:GCCGATAGAGGTGCAATGGATAT Primer 2:CCTTTCAGATTCTTTCTAATTAT | |
|
Linked marker |
est. P1 cotransduction: 88% [5] | ||
|
leuO3051::Tn10 |
Linked marker |
est. P1 cotransduction: 12% [5] | |
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 Baba T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2: 2006.0008 PubMed EcoliWiki page
- ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
- ↑ Kitagawa M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive): Unique Resources for Biological Research. DNA Res 12: 291-9 PubMed EcoliWiki page
- ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
