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caiF:Gene Product(s)
From EcoliWiki
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| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
CaiF |
|---|---|
| Synonyms |
DNA-binding transcriptional activator[1], B0034[2][1], CaiF[2][1] |
| Product description |
CaiF transcriptional activator[2][3] Transcriptional activator of cai operon[4] |
| EC number (for enzymes) |
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| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0006350 |
transcription |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [5] |
complete | |||
| GO:0006355 |
regulation of transcription, DNA-dependent |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [6] |
complete | |||
| GO:0006350 |
transcription |
IDA: Inferred from Direct Assay |
P |
Seeded from EcoCyc 12.5 [5] |
complete | |||
| GO:0006350 |
transcription |
IEP: Inferred from Expression Pattern |
P |
Seeded from EcoCyc 12.5 [5] |
complete | |||
| GO:0006350 |
transcription |
IEP: Inferred from Expression Pattern |
P |
Seeded from EcoCyc 12.5 [5] |
complete | |||
| GO:0005737 |
cytoplasm |
C |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0016563 |
transcription activator activity |
F |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0009310 |
amine catabolic process |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0016563 |
transcription activator activity |
EXP: Inferred from Experiment |
F |
Seeded from EcoCyc 11.1[3]. |
complete | |||
| GO:0009437 |
carnitine metabolic process |
EXP: Inferred from Experiment |
P |
complete | ||||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Experiment(s):EBI-1135382 | |||
|
Protein |
Experiment(s):EBI-1135382 | |||
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Source | Notes |
|---|---|---|---|---|
| edit table |
Notes
Structure and Physical Properties
Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MKLHTIDIST ILIWPCLIAS KRVIARLLIC ETGVRMCEGY VEKPLYLLIA EWMMAENRWV IAREISIHFD IEHSKAVNTL TYILSEVTEI SCEVKMIPNK LEGRGCQCQR LVKVVDIDEQ IYARLRNNSR EKLVGVRKTP RIPAVPLTEL NREQKWQMML SKSMRR |
|---|---|
| Length |
166 |
| Mol. Wt |
19.396 kDa |
| pI |
9.2 (calculated) |
| Extinction coefficient |
27,960 - 28,710 (calc based on 4 Y, 4 W, and 6 C residues) |
| edit table |
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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Structure
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Structure figures
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| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 5.3 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
- ↑ Buchet A et al. (1999) Positive co-regulation of the Escherichia coli carnitine pathway cai and fix operons by CRP and the CaiF activator. Mol Microbiol 34: 562-75 PubMed EcoliWiki page
- ↑ 8.0 8.1 8.2 Eichler K et al. (1996) Identification and characterization of the caiF gene encoding a potential transcriptional activator of carnitine metabolism in Escherichia coli. J Bacteriol 178: 1248-57 PubMed EcoliWiki page
- ↑ Buchet A et al. (1998) Regulation of the carnitine pathway in Escherichia coli: investigation of the cai-fix divergent promoter region. J Bacteriol 180: 2599-608 PubMed EcoliWiki page
- ↑ 10.0 10.1 Arifuzzaman M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res 16: 686-91 PubMed EcoliWiki page
