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csgC:On One Page

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Standard Name

csgC

Gene Synonym(s)

ECK1029, b1043, JW1026, ycdE[1]

Product Desc.

putative curli production protein[2][3]

Possible secretion or assembly protein for bacterial fibers[4]

Product Synonyms(s)

predicted curli production protein[1], B1043[2][1], YcdE[2][1], CsgC[2][1]

Function from GO
Knock-Out Phenotype
Regulation/Expression

transcription unit(s): csgBAC[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(csgC)    Textpresso(csgC)

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Notes

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Potential periplasmic protein: signal peptide of 17 or 22 aa weakly predicted.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

csgC

Mnemonic

Curlin sigma S-dependent growth

Synonyms

ECK1029, b1043, JW1026, ycdE[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

StrainMap locationGenome coordinatesGenome browsersSequence links

MG1655

23.8 minutes 

MG1655: 1104184..1104516
gbrowse_img.php?coord=1104184..1104516&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 1119530..1119862
gbrowse_img.php?coord=1119530..1119862&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 1105202..1105534
gbrowse_img.php?coord=1105202..1105534&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 1159629..1159961
gbrowse_img.php?coord=1159629..1159961&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

BW2952

NC_012759: 1008109..1008441
gbrowse_img.php?coord=1008109..1008441&genome=BW2952&name=NC_012759&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature typeLocationDescription
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

AlleleNt change(s)AA change(s)Phenotype: TypePhenotype: DescriptionReferenceAvailabilityComments

ΔcsgC (Keio:JW1026)

deletion

deletion

PMID:16738554

Shigen


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

ResourceResource TypeSourceNotes/Reference

JW1026

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAATACGTTATTACTCCTTGC

Primer 2:CCAGACTTTTCTGAAGAGGGCGG

zcc-282::Tn10

Linked marker

CAG18466 = CGSC7359[5]

est. P1 cotransduction: 17% [6]

zce-726::Tn10

Linked marker

CAG12078 = CGSC7361[5]

est. P1 cotransduction: 9% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:G6548

EchoBASE (EcoliWiki Page)

EchoBASE:EB3190

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1043

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C1307

EcoGene (EcoliWiki Page)

EcoGene:EG13414

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:CSGC

ASAP (EcoliWikiPage)

ASAP:ABE-0003542


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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

CsgC

Synonyms

predicted curli production protein[1], B1043[2][1], YcdE[2][1], CsgC[2][1]

Product description

putative curli production protein[2][3]

Possible secretion or assembly protein for bacterial fibers[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

QualifierGO IDGO term nameReference(s)Evidence Codewith/fromAspectNotesStatus

GO:0005575

cellular component

C

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner TypePartnerNotesReferencesEvidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

CompartmentDescriptionEvidenceSourceNotes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MNTLLLLAAL SSQITFNTTQ QGDVYTIIPE VTLTQSCLCR VQILSLREGS SGQSQTKQEK
TLSLPANQPI ALTKLSLNIS PDDRVKIVVT VSDGQSLHLS QQWPPSSEKS
Length

110

Mol. Wt

11.966 kDa

pI

7.2 (calculated)

Extinction coefficient

6,990 - 7,240 (calc based on 1 Y, 1 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

TypeResiduesDescriptionNotesReferences

motif

1-17

UniProt Manual:Signal Peptides

UniProt:P52107


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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures
Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource typeSourceNotes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:G6548-MONOMER

UniProt (EcoliWiki Page)

UniProt:P52107

RefSeq (EcoliWiki Page)

RefSeq:NP_415561


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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

MoleculeOrganism or StrainCellular levelUnitsMediumTemperature °COther (e.g. anaerobic)Growth rateAssay usedNotesReference(s)
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

csgBAC

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Figure courtesy of RegulonDB

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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gbrowse_img.php?coord=1104164..1104204&genome=ecoli&name=MG1655&trackset=Gene+DNA_+Protein&width=400&figure=Nterm&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele NameMutationPhenotypeReference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

TypeReferenceNotes

microarray

GEO Profiles:b1043 (EcoliWiki Page)

NCBI GEO profiles for csgC

microarray

GenExpDB:b1043 (EcoliWiki Page)

Summary of data for csgC from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource NameResource TypeDescriptionSourceNotes

GFP Fusion

Intergenic region (1104032..1104202) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ07; Well:E1[7]

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Notes

Accessions Related to csgC Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:G6548

EchoBASE (EcoliWiki Page)

EchoBASE:EB3190

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1043

EcoGene (EcoliWiki Page)

EcoGene:EG13414


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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

OrganismHomologs (Statistics)Comments

Shigella flexneri

CSGC

From SHIGELLACYC

E. coli O157

CSGC

From ECOO157CYC

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat Methods 3: 623-8 PubMed EcoliWiki page

Categories

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