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cydA:Gene Product(s)
From EcoliWiki
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
CydA |
|---|---|
| Synonyms |
cytochrome d terminal oxidase, subunit I[1], B0733[2][1], CydA[2][1] |
| Product description |
cytochrome bd-I terminal oxidase subunit I[2][3]; Component of cytochrome bd-I terminal oxidase[2][3] Cytochrome d (bd-I) terminal oxidase subunit I; upregulated in biofilms and microaerobic conditions; aerobically repressed by H-NS; anaerobically repressed by Fnr[4] |
| EC number (for enzymes) | |
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005506 |
iron ion binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [5] |
complete | |||
| GO:0006810 |
transport |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [5] |
complete | |||
| GO:0016491 |
oxidoreductase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [5] |
complete | |||
| GO:0031224 |
intrinsic to membrane |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc [5] |
complete | |||
| GO:0009055 |
electron carrier activity |
IDA: Inferred from Direct Assay |
F |
Seeded from EcoCyc 12.5 [7] |
complete | |||
| GO:0016679 |
oxidoreductase activity, acting on diphenols and related substances as donors |
IDA: Inferred from Direct Assay |
F |
Seeded from EcoCyc [5] |
complete | |||
| GO:0017004 |
cytochrome complex assembly |
IDA: Inferred from Direct Assay |
P |
Seeded from EcoCyc [5] |
complete | |||
| GO:0020037 |
heme binding |
IDA: Inferred from Direct Assay |
F |
Seeded from EcoCyc [5] |
complete | |||
| GO:0005886 |
plasma membrane |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0997 |
C |
Seeded from EcoCyc [5] |
complete | ||
| GO:0016020 |
membrane |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc [5] |
complete | |||
| GO:0022900 |
electron transport chain |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [5] |
complete | |||
| GO:0046872 |
metal ion binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [5] |
complete | |||
| GO:0055114 |
oxidation reduction |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [5] |
complete | |||
| GO:0009054 |
electron acceptor activity |
F |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Subunits of [[:Category:Complex:cytochrome bd-I terminal oxidase|cytochrome bd-I terminal oxidase]] |
could be indirect |
| |
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Source | Notes |
|---|---|---|---|---|
|
plasma membrane |
C-terminus localized in the cytoplasm with 9 predicted transmembrane domains |
Daley et al. (2005) [11] |
| |
| edit table |
Notes
Structure and Physical Properties
Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MMLDIVELSR LQFALTAMYH FLFVPLTLGM AFLLAIMETV YVLSGKQIYK DMTKFWGKLF GINFALGVAT GLTMEFQFGT NWSYYSHYVG DIFGAPLAIE GLMAFFLEST FVGLFFFGWD RLGKVQHMCV TWLVALGSNL SALWILVANG WMQNPIASDF NFETMRMEMV SFSELVLNPV AQVKFVHTVA SGYVTGAMFI LGISAWYMLK GRDFAFAKRS FAIAASFGMA AVLSVIVLGD ESGYEMGDVQ KTKLAAIEAE WETQPAPAAF TLFGIPDQEE ETNKFAIQIP YALGIIATRS VDTPVIGLKE LMVQHEERIR NGMKAYSLLE QLRSGSTDQA VRDQFNSMKK DLGYGLLLKR YTPNVADATE AQIQQATKDS IPRVAPLYFA FRIMVACGFL LLAIIALSFW SVIRNRIGEK KWLLRAALYG IPLPWIAVEA GWFVAEYGRQ PWAIGEVLPT AVANSSLTAG DLIFSMVLIC GLYTLFLVAE LFLMFKFARL GPSSLKTGRY HFEQSSTTTQ PAR |
|---|---|
| Length |
523 |
| Mol. Wt |
58.338 kDa |
| pI |
6.8 (calculated) |
| Extinction coefficient |
98,320 - 98,695 (calc based on 18 Y, 13 W, and 3 C residues) |
| edit table |
Domains/Motifs/Modification Sites
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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Structure
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Structure figures
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| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
- ↑ Matsumoto Y et al. (2006) Mass spectrometric analysis of the ubiquinol-binding site in cytochrome bd from Escherichia coli. J Biol Chem 281: 1905-12 PubMed EcoliWiki page
- ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Kita K et al. (1984) Terminal oxidases of Escherichia coli aerobic respiratory chain. II. Purification and properties of cytochrome b558-d complex from cells grown with limited oxygen and evidence of branched electron-carrying systems. J Biol Chem 259: 3375-81 PubMed EcoliWiki page
- ↑ Miller MJ & Gennis RB (1986) Purification and reconstitution of the cytochrome d terminal oxidase complex from Escherichia coli. Methods Enzymol 126: 87-94 PubMed EcoliWiki page
- ↑ Hill JJ et al. (1993) Spectroscopic evidence for a heme-heme binuclear center in the cytochrome bd ubiquinol oxidase from Escherichia coli. Proc Natl Acad Sci U S A 90: 5863-7 PubMed EcoliWiki page
- ↑ Daley DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308: 1321-3 PubMed EcoliWiki page
Categories
[[Category:Complex:cytochrome bd-I terminal oxidase]]

