Try the new EcoliHub and let us know what you'd like to see.
der:Gene Product(s)
From EcoliWiki
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
Der |
|---|---|
| Synonyms |
predicted GTP-binding protein[1], B2511[2][1], Der[2][1], YfgK[2][1], EngA[2][1] |
| Product description |
50S ribosomal subunit stability factor[2][3] Multicopy suppressor of ftsJ; depleted cells form filaments with defective chromosome segregation; GTPase[4] |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005622 |
intracellular |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc [5] |
complete | |||
| GO:0005525 |
GTP binding |
GO_REF:0000002 |
IEA: Inferred from Electronic Annotation |
InterPro:IPR002917 |
F |
Seeded from EcoCyc 12.5 [6] |
complete | |
| GO:0000166 |
nucleotide binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [5] |
complete | |||
| GO:0009282 |
cytosolic large ribosomal subunit (sensu Bacteria) |
C |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0000027 |
ribosomal large subunit assembly and maintenance |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0042273 |
ribosomal large subunit biogenesis and assembly |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Experiment(s):EBI-878632 | |||
|
Protein |
Experiment(s):EBI-878632 | |||
|
Protein |
Experiment(s):EBI-878632 | |||
|
Protein |
Experiment(s):EBI-878632 | |||
|
Protein |
Experiment(s):EBI-878632 | |||
|
Protein |
Experiment(s):EBI-878632 | |||
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Source | Notes |
|---|---|---|---|---|
| edit table |
Notes
Structure and Physical Properties
Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MRCLMIYKNE ALNMVPVVAL VGRPNVGKST LFNRLTRTRD ALVADFPGLT RDRKYGRAEI EGREFICIDT GGIDGTEDGV ETRMAEQSLL AIEEADVVLF MVDARAGLMP ADEAIAKHLR SREKPTFLVA NKTDGLDPDQ AVVDFYSLGL GEIYPIAASH GRGVLSLLEH VLLPWMEDLA PQEEVDEDAE YWAQFEAEEN GEEEEEDDFD PQSLPIKLAI VGRPNVGKST LTNRILGEER VVVYDMPGTT RDSIYIPMER DGREYVLIDT AGVRKRGKIT DAVEKFSVIK TLQAIEDANV VMLVIDAREG ISDQDLSLLG FILNSGRSLV IVVNKWDGLS QEVKEQVKET LDFRLGFIDF ARVHFISALH GSGVGNLFES VREAYDSSTR RVGTSMLTRI MTMAVEDHQP PLVRGRRVKL KYAHAGGYNP PIVVIHGNQV KDLPDSYKRY LMNYFRKSLD VMGSPIRIQF KEGENPYANK RNTLTPTQMR KRKRLMKHIK KNK |
|---|---|
| Length |
503 |
| Mol. Wt |
56.617 kDa |
| pI |
5.8 (calculated) |
| Extinction coefficient |
38,850 - 39,100 (calc based on 15 Y, 3 W, and 2 C residues) |
| edit table |
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
|
|
Structure
|
Structure figures
| ||||||||||||||||||||||||||||
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
- ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 7.0 7.1 7.2 7.3 7.4 7.5 Butland G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433: 531-7 PubMed EcoliWiki page
