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Quickview | Gene | Product(s) | Expression| Evolution | References |

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See Help:Quickview for help with entering information in the Quickview table.

Standard Name

dnaJ

Gene Synonym(s)

ECK0015, b0015, JW0014, groP, grpC[1]

Product Desc.

chaperone with DnaK; heat shock protein[2][3];

Component of DnaJ/DnaK/GrpE[2][3]

DnaK co-chaperone; stress-related DNA biosynthesis, responsive to heat shock; binds Zn(II)[4]

Product Synonyms(s)

chaperone Hsp40, co-chaperone with DnaK[1], B0015[2][1], GrpC[2][1], GroP[2][1], DnaJ[2][1]

Function from GO

Molecular Function

Biological Process

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): dnaKJ[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(dnaJ)    Textpresso(dnaJ)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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DnaK and DnaJ both bind to the same target peptide, forming a ternary complex.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

dnaJ

Mnemonic

DNA

Synonyms

ECK0015, b0015, JW0014, groP, grpC[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

StrainMap locationGenome coordinatesGenome browsersSequence links

MG1655

0.31 minutes 

MG1655: 14168..15298
gbrowse_img.php?coord=14168..15298&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 14166..15296
gbrowse_img.php?coord=14166..15296&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 14168..15298
gbrowse_img.php?coord=14168..15298&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 14168..15298
gbrowse_img.php?coord=14168..15298&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

BW2952

NC_012759: 14168..15298
gbrowse_img.php?coord=14168..15298&genome=BW2952&name=NC_012759&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature typeLocationDescription
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

AlleleNt change(s)AA change(s)Phenotype: TypePhenotype: DescriptionReferenceAvailabilityComments

dnaJC144S

C144S

Loss of dnaK-independent chaperone activity; when associated with S-147; S- 197 and S-200

seeded from UniProt:P08622

dnaJC161H

C161H

No effect on chaperone function; when associated with H-183

seeded from UniProt:P08622

dnaJC147S

C147S

Loss of dnaK-independent chaperone activity; when associated with S-144; S- 197 and S-200

seeded from UniProt:P08622

dnaJKE51AA

KE51AA

No effect

seeded from UniProt:P08622

dnaJY54A

Y54A

No effect

seeded from UniProt:P08622

dnaJE55A

E55A

No effect

seeded from UniProt:P08622

dnaJTD58AA

TD58AA

No effect

seeded from UniProt:P08622

dnaJDQ67AA

DQ67AA

No effect

seeded from UniProt:P08622

dnaJSQ60AA

SQ60AA

No effect

seeded from UniProt:P08622

dnaJKR62AA

KR62AA

No effect

seeded from UniProt:P08622

dnaJKE48AA

KE48AA

No effect

seeded from UniProt:P08622

dnaJKE41AA

KE41AA

No effect

seeded from UniProt:P08622

dnaJE44A

E44A

No effect

seeded from UniProt:P08622

dnaJK46A

K46A

No effect

seeded from UniProt:P08622

dnaJF47A

F47A

Loss of function

seeded from UniProt:P08622

dnaJMK30AA

MK30AA

No effect

seeded from UniProt:P08622

dnaJY32A

Y32A

No effect

seeded from UniProt:P08622

dnaJH33Q

H33Q

Loss of ability to stimulate dnaK ATPase activity

seeded from UniProt:P08622

dnaJQ38A

Q38A

No effect

seeded from UniProt:P08622

dnaJP34F

P34F

Loss of function

seeded from UniProt:P08622

dnaJD35N

D35N

Loss of ability to bind dnaK

seeded from UniProt:P08622

dnaJR36A

R36A

Decrease in chaperone function

seeded from UniProt:P08622

dnaJN37A

N37A

Decrease in chaperone function

seeded from UniProt:P08622

dnaJL28A

L28A

No effect

seeded from UniProt:P08622

dnaJRE19AA

RE19AA

No effect

seeded from UniProt:P08622

dnaJY25A

Y25A

Loss of activity

seeded from UniProt:P08622

dnaJK26A

K26A

Loss of activity

seeded from UniProt:P08622

dnaJA29G

A29G

No effect

seeded from UniProt:P08622

dnaJR27A

R27A

No effect

seeded from UniProt:P08622

ΔdnaJ (Keio:JW0014)

deletion

deletion

PMID:16738554

Shigen
CGSC8343[5]

dnaJC161S

C161S

Loss of function; when associated with S-164; S-183 and S-186

seeded from UniProt:P08622

dnaJC164H

C164H

No effect on chaperone function; when associated with H-183

seeded from UniProt:P08622

dnaJC164S

C164S

Loss of function; when associated with S-161; S-183 and S-186

seeded from UniProt:P08622

dnaJC186H

C186H

No effect on chaperone function

seeded from UniProt:P08622

dnaJC186S

C186S

Loss of function; when associated with S-161; S-164 and S-184

seeded from UniProt:P08622

dnaJC197S

C197S

Loss of dnaK-independent chaperone activity; when associated with S-144; S- 147 and S-200

seeded from UniProt:P08622

dnaJC183H

C183H

No effect on chaperone function. Same effect; when associated with H-161 or H-164

seeded from UniProt:P08622

dnaJC183S

C183S

Loss of function; when associated with S-161; S-164 and S-186

seeded from UniProt:P08622

dnaJC200S

C200S

Loss of dnaK-independent chaperone activity; when associated with S-144; S- 147 and S-197

seeded from UniProt:P08622

dnaJ259(ts)

temperature sensitive

CGSC:6712

ΔdnaJ735::kan

PMID:16738554

CGSC:100626

ΔdnaJ

  • defective mini-Tn10 insertion
  • block λ DNA replication at all temp
  • growth defect above 30˚C

PMID:2144273

Strain BW2952

T5C

A2V

Nonsynonomous mutation

PMID:19376874

This is a difference relative to E. coli K-12 MG1655.

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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

ResourceResource TypeSourceNotes/Reference

JW0014

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGCTAAGCAAGATTATTACGA

Primer 2:CCGCGGGTCAGGTCGTCAAAAAA

thrA34::Tn10

Linked marker

CAG18442 = CGSC7320[5]

est. P1 cotransduction: 61% [6]
Synonyms:thr-34::Tn10

carB96::Tn10

Linked marker

CAG12093 = CGSC7322[5]

est. P1 cotransduction: 52% [6]
Synonyms:car-96::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10240

EchoBASE (EcoliWiki Page)

EchoBASE:EB0236

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0015

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C0020

EcoGene (EcoliWiki Page)

EcoGene:EG10240

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:DNAJ

CGSC (EcoliWiki Page)

CGSC:845

ASAP (EcoliWikiPage)

ASAP:ABE-0000054


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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

DnaJ

Synonyms

chaperone Hsp40, co-chaperone with DnaK[1], B0015[2][1], GrpC[2][1], GroP[2][1], DnaJ[2][1]

Product description

chaperone with DnaK; heat shock protein[2][3];

Component of DnaJ/DnaK/GrpE[2][3]

DnaK co-chaperone; stress-related DNA biosynthesis, responsive to heat shock; binds Zn(II)[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

QualifierGO IDGO term nameReference(s)Evidence Codewith/fromAspectNotesStatus

GO:0051082

unfolded protein binding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR001305
InterPro:IPR002939
InterPro:IPR003095
InterPro:IPR008971
InterPro:IPR012724
HAMAP:MF_01152

F

Seeded from EcoCyc 12.5 [7]

complete

GO:0046872

metal ion binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc [8]

complete

GO:0031072

heat shock protein binding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001305
InterPro:IPR001623
InterPro:IPR003095

F

Seeded from EcoCyc 12.5 [7]

complete

GO:0009408

response to heat

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012724

P

Seeded from EcoCyc [8]

complete

GO:0008270

zinc ion binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0862

F

Seeded from EcoCyc [8]

complete

GO:0006950

response to stress

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0346

P

Seeded from EcoCyc [8]

complete

GO:0006457

protein folding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001305
InterPro:IPR002939
InterPro:IPR003095
InterPro:IPR008971
InterPro:IPR012724

P

Seeded from EcoCyc [8]

complete

GO:0006260

DNA replication

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0235

P

Seeded from EcoCyc [8]

complete

GO:0005737

cytoplasm

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc 12.5 [7]

complete

GO:0005524

ATP binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012724

F

Seeded from EcoCyc [8]

complete

GO:0003756

protein disulfide isomerase activity

PMID:7559385

IDA: Inferred from Direct Assay

F

Figure 4A-

complete

GO:0005515

protein binding

PMID:9860950

IMP: Inferred from Mutant Phenotype

F

complete

GO:0008270

zinc ion binding

PMID:12941935

IMP: Inferred from Mutant Phenotype

F

complete

GO:0006457

protein folding

PMID:7559385

IDA: Inferred from Direct Assay

P

complete

GO:0042026

protein refolding

PMID:7559385

IDA: Inferred from Direct Assay

P

complete

GO:0051082

unfolded protein binding

PMID:7559385

IDA: Inferred from Direct Assay

F

complete

GO:0042803

protein homodimerization activity

PMID:15849180

IDA: Inferred from Direct Assay

F

complete

GO:0005624

membrane fraction

PMID:6220698

IDA: Inferred from Direct Assay

C

complete

GO:0005737

cytoplasm

PMID:6220698

IDA: Inferred from Direct Assay

C

DnaJ can be detected in the soluble fraction as well as being loosely membrane-associated.

complete

GO:0008270

zinc ion binding

PMID:11985624

IDA: Inferred from Direct Assay

F

complete

GO:0005624

membrane fraction

PMID:3889001

IDA: Inferred from Direct Assay

C

complete

GO:0008270

zinc ion binding

PMID:8662861

IDA: Inferred from Direct Assay

F

complete

GO:0006260

DNA replication

PMID:2144273

IMP: Inferred from Mutant Phenotype

P

λ DNA replication affected

complete

GO:0009408

response to heat

PMID:8349564

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner TypePartnerNotesReferencesEvidence

Protein

Subunits of DnaJ/DnaK/GrpE

could be indirect

Protein

mnmG

PMID:16606699

Experiment(s):EBI-1135319

Protein

sucB

PMID:16606699

Experiment(s):EBI-1135319

Protein

pdxB

PMID:16606699

Experiment(s):EBI-1135319

Protein

aceE

PMID:15690043

Experiment(s):EBI-883621

Protein

add

PMID:15690043

Experiment(s):EBI-883621

Protein

atpD

PMID:15690043

Experiment(s):EBI-883621

Protein

clpA

PMID:15690043

Experiment(s):EBI-883621

Protein

deaD

PMID:15690043

Experiment(s):EBI-883621, EBI-881486

Protein

dnaK

PMID:15690043

Experiment(s):EBI-883621

Protein

gatY

PMID:15690043

Experiment(s):EBI-883621

Protein

imp

PMID:15690043

Experiment(s):EBI-883621

Protein

infB

PMID:15690043

Experiment(s):EBI-883621

Protein

malT

PMID:15690043

Experiment(s):EBI-883621, EBI-879887

Protein

metK

PMID:15690043

Experiment(s):EBI-883621, EBI-881611, EBI-889076

Protein

mreB

PMID:15690043

Experiment(s):EBI-883621, EBI-888239, EBI-893751

Protein

mukB

PMID:15690043

Experiment(s):EBI-883621

Protein

narG

PMID:15690043

Experiment(s):EBI-883621, EBI-880367

Protein

pstB

PMID:15690043

Experiment(s):EBI-883621, EBI-891381

Protein

recA

PMID:15690043

Experiment(s):EBI-883621

Protein

relE

PMID:15690043

Experiment(s):EBI-883621

Protein

rho

PMID:15690043

Experiment(s):EBI-883621

Protein

rplA

PMID:15690043

Experiment(s):EBI-883621

Protein

rplJ

PMID:15690043

Experiment(s):EBI-883621

Protein

rplS

PMID:15690043

Experiment(s):EBI-883621

Protein

rplV

PMID:15690043

Experiment(s):EBI-883621

Protein

rpoC

PMID:15690043

Experiment(s):EBI-883621

Protein

rpsB

PMID:15690043

Experiment(s):EBI-883621

Protein

rpsE

PMID:15690043

Experiment(s):EBI-883621

Protein

rpsJ

PMID:15690043

Experiment(s):EBI-883621, EBI-890903

Protein

rpsM

PMID:15690043

Experiment(s):EBI-883621

Protein

srmB

PMID:15690043

Experiment(s):EBI-883621, EBI-889906

Protein

trxC

PMID:15690043

Experiment(s):EBI-883621

Protein

tufA

PMID:15690043

Experiment(s):EBI-883621, EBI-894882

Protein

yjbJ

PMID:15690043

Experiment(s):EBI-883621

Protein

rplX

PMID:15690043

Experiment(s):EBI-890903

Protein

rpsF

PMID:15690043

Experiment(s):EBI-890903

Protein

rpsN

PMID:15690043

Experiment(s):EBI-890903

Protein

rplW

PMID:15690043

Experiment(s):EBI-890903

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

CompartmentDescriptionEvidenceSourceNotes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MAKQDYYEIL GVSKTAEERE IRKAYKRLAM KYHPDRNQGD KEAEAKFKEI KEAYEVLTDS
QKRAAYDQYG HAAFEQGGMG GGGFGGGADF SDIFGDVFGD IFGGGRGRQR AARGADLRYN
MELTLEEAVR GVTKEIRIPT LEECDVCHGS GAKPGTQPQT CPTCHGSGQV QMRQGFFAVQ
QTCPHCQGRG TLIKDPCNKC HGHGRVERSK TLSVKIPAGV DTGDRIRLAG EGEAGEHGAP
AGDLYVQVQV KQHPIFEREG NNLYCEVPIN FAMAALGGEI EVPTLDGRVK LKVPGETQTG
KLFRMRGKGV KSVRGGAQGD LLCRVVVETP VGLNERQKQL LQELQESFGG PTGEHNSPRS
KSFFDGVKKF FDDLTR
Length

376

Mol. Wt

41.099 kDa

pI

8.0 (calculated)

Extinction coefficient

14,900 - 16,150 (calc based on 10 Y, W, and 10 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

TypeResiduesDescriptionNotesReferences

Initiator Methionine

1

Removed

UniProt:P08622

Motif

zinc finger

PMID:8662861


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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures
Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource typeSourceNotes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10240-MONOMER

UniProt (EcoliWiki Page)

UniProt:P08622

PFAM (EcoliWiki Page)

PFAM:PF00226

RefSeq (EcoliWiki Page)

RefSeq:NP_414556


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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

MoleculeOrganism or StrainCellular levelUnitsMediumTemperature °COther (e.g. anaerobic)Growth rateAssay usedNotesReference(s)
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

dnaKJ

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Figure courtesy of RegulonDB

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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gbrowse_img.php?coord=14148..14188&genome=ecoli&name=MG1655&trackset=Gene+DNA_+Protein&width=400&figure=Nterm&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele NameMutationPhenotypeReference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

TypeReferenceNotes

microarray

GEO Profiles:b0015 (EcoliWiki Page)

NCBI GEO profiles for dnaJ

microarray

GenExpDB:b0015 (EcoliWiki Page)

Summary of data for dnaJ from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource NameResource TypeDescriptionSourceNotes
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Notes

Accessions Related to dnaJ Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10240

EchoBASE (EcoliWiki Page)

EchoBASE:EB0236

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0015

EcoGene (EcoliWiki Page)

EcoGene:EG10240


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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

OrganismHomologs (Statistics)Comments

Anopheles gambiae

  • ENSANGP00000010875 (score: 1.000; bootstrap: 68%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000002749 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G22360 (score: 1.000; bootstrap: 63%)
  • AT4G39960 (score: 0.769)
  • AT1G80030 (score: 0.169)
  • AT3G17830 (score: 0.084)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000013207 (score: 1.000; bootstrap: 61%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00041373 (score: 1.000; bootstrap: 93%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00001028 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000028338 (score: 1.000; bootstrap: 86%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014962 (score: 1.000; bootstrap: 85%)

From Inparanoid:20070104

Danio rerio

  • ZDB-CDNA-040425-242 (score: 1.000; bootstrap: 90%)
  • ZDB-GENE-030131-7837 (score: 1.000; bootstrap: 91%)
  • ZDB-CDNA-040425-243 (score: 1.000; bootstrap: 91%)
  • ZDB-CDNA-040425-244 (score: 0.502)
  • ZDB-GENE-040115-3 (score: 0.502)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0206193 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0002174 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21376-PA (score: 1.000; bootstrap: 84%)
  • GA22062-PA (score: 0.069)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000012682 (score: 1.000; bootstrap: 96%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000262375 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000010650 (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000020443 (score: 1.000; bootstrap: 86%)

From Inparanoid:20070104

Mus musculus

  • MGI:1933786 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Oryza gramene

  • Q5W730 (score: 1.000; bootstrap: 56%)
  • Q948S9 (score: 0.958)
  • Q6K850 (score: 0.173)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000044217 (score: 1.000; bootstrap: 67%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000005479 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YFL016C (score: 1.000; bootstrap: 65%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC4G34 (score: 1.000; bootstrap: 83%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000147424 (score: 1.000; bootstrap: 85%)
  • NEWSINFRUP00000151350 (score: 0.309)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00018520001 (score: 1.000; bootstrap: 96%)
  • GSTENP00004136001 (score: 0.290)
  • GSTENP00002750001 (score: 0.051)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000037678 (score: 1.000; bootstrap: 81%)

From Inparanoid:20070104

Shigella flexneri

DNAJ

From SHIGELLACYC

E. coli O157

DNAJ

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

PFAM (EcoliWiki Page)

PFAM:PF00226


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ 7.0 7.1 7.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  8. ↑ 8.0 8.1 8.2 8.3 8.4 8.5 8.6 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70

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