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dnaK:On One Page

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Standard Name

dnaK

Gene Synonym(s)

ECK0014, b0014, JW0013, grpF, seg, lop, groPAB, groPC, groPF, grpC, dnaL, groP, groPA[1][2]

Product Desc.

chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins[2][3];

Component of DnaJ/DnaK/GrpE[2][3]

Hsp70 molecular chaperone, heat-inducible[4]

Product Synonyms(s)

chaperone Hsp70, co-chaperone with DnaJ[1], B0014[2][1], GrpC[2][1], GrpF[2][1], Seg[2][1], GroP[2][1], DnaL[2][1], DnaK[2][1]

Function from GO

Molecular Function

Cellular Component

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): dnaKJ[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(dnaK)    Textpresso(dnaK)

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Notes

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ATP-regulated binding and release of polypeptide substrates. Binds Zn(II). DnaJ is co-chaperone. Role in the initiation of DNA replication. DnaK has secondary amide peptide bond cis-trans isomerase (APIase) activity. A dnaK mutant is inviable above 42C, or below 8C (as enabled by transgenic Oleispira antarctica Cpn10/60). Delta tig delta dnaK mutants are synthetic lethal at 30 degrees C, however, no lethal effects are observed at 23 degrees C; overproduction of GroEL/GroES at 30 degrees C supresses synthetic lethality. dnaK, hscA, hscC and yegD are paralogs. HT_Cmplx22_Cyt: DnaK+GrpE+GyrA+RpsA. HT_Cmplx30_Mem: ClpB+DnaK+InfB+RpsA. After four hours of Zn(II) stress, protein levels increased (Easton, 2006).[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

dnaK

Mnemonic

DNA

Synonyms

ECK0014, b0014, JW0013, grpF, seg, lop, groPAB, groPC, groPF, grpC, dnaL, groP, groPA[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

StrainMap locationGenome coordinatesGenome browsersSequence links

MG1655

0.26 minutes 

MG1655: 12163..14079
gbrowse_img.php?coord=12163..14079&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 12161..14077
gbrowse_img.php?coord=12161..14077&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 12163..14079
gbrowse_img.php?coord=12163..14079&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 12163..14079
gbrowse_img.php?coord=12163..14079&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

BW2952

NC_012759: 12163..14079
gbrowse_img.php?coord=12163..14079&genome=BW2952&name=NC_012759&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature typeLocationDescription
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

AlleleNt change(s)AA change(s)Phenotype: TypePhenotype: DescriptionReferenceAvailabilityComments

ΔdnaK (Keio:JW0013)

deletion

deletion

PMID:16738554

Shigen
CGSC8342[5]

dnaKG32D

G32D

In SEG-1 and dnaK756(TS); confers temperature sensitivity

seeded from UniProt:P0A6Y8

dnaKV436I

V436I

In mutant SEG-2; confers temperature sensitivity

seeded from UniProt:P0A6Y8

dnaKG455D

G455D

In mutant dnaK756(TS); confers temperature sensitivity

seeded from UniProt:P0A6Y8

dnaKG468D

G468D

In mutant dnaK756(TS); confers temperature sensitivity

seeded from UniProt:P0A6Y8

dnaK756(ts)

temperature sensitive

CGSC:6707

ΔdnaK734::kan

PMID:16738554

CGSC:100628


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

ResourceResource TypeSourceNotes/Reference

JW0013

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGGTAAAATAATTGGTATCGA

Primer 2:CCTTTTTTGTCTTTGACTTCTTC

thrA34::Tn10

Linked marker

CAG18442 = CGSC7320[5]

est. P1 cotransduction: 66% [6]
Synonyms:thr-34::Tn10

carB96::Tn10

Linked marker

CAG12093 = CGSC7322[5]

est. P1 cotransduction: 48% [6]
Synonyms:car-96::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10241

EchoBASE (EcoliWiki Page)

EchoBASE:EB0237

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0014

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C0019

EcoGene (EcoliWiki Page)

EcoGene:EG10241

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:DNAK

CGSC (EcoliWiki Page)

CGSC:844

ASAP (EcoliWikiPage)

ASAP:ABE-0000052


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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

DnaK

Synonyms

chaperone Hsp70, co-chaperone with DnaJ[1], B0014[2][1], GrpC[2][1], GrpF[2][1], Seg[2][1], GroP[2][1], DnaL[2][1], DnaK[2][1]

Product description

chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins[2][3];

Component of DnaJ/DnaK/GrpE[2][3]

Hsp70 molecular chaperone, heat-inducible[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

QualifierGO IDGO term nameReference(s)Evidence Codewith/fromAspectNotesStatus

GO:0051082

unfolded protein binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012725

F

Seeded from EcoCyc [7]

complete

GO:0016020

membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc [7]

complete

GO:0006950

response to stress

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0346

P

Seeded from EcoCyc [7]

complete

GO:0006457

protein folding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012725

P

Seeded from EcoCyc [7]

complete

GO:0006260

DNA replication

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0235

P

Seeded from EcoCyc [7]

complete

GO:0005737

cytoplasm

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc 12.5 [8]

complete

GO:0005524

ATP binding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR001023
InterPro:IPR012725
SP_KW:KW-0067
HAMAP:MF_00332

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0000166

nucleotide binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc [7]

complete

GO:0005515

protein binding

PMID:15690043

IPI: Inferred from Physical Interaction

UniProtKB:P0A853

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:15690043

IPI: Inferred from Physical Interaction

UniProtKB:P0AAI5

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:15690043

IPI: Inferred from Physical Interaction

UniProtKB:P0AB71

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:15690043

IPI: Inferred from Physical Interaction

UniProtKB:P0AC38

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:15690043

IPI: Inferred from Physical Interaction

UniProtKB:P0AC81

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:15690043

IPI: Inferred from Physical Interaction

UniProtKB:P0ACX3

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:15690043

IPI: Inferred from Physical Interaction

UniProtKB:P0ADX9

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:15690043

IPI: Inferred from Physical Interaction

UniProtKB:P12282

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:15690043

IPI: Inferred from Physical Interaction

UniProtKB:P23721

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:15690043

IPI: Inferred from Physical Interaction

UniProtKB:P28304

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:15690043

IPI: Inferred from Physical Interaction

UniProtKB:P37342

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:15690043

IPI: Inferred from Physical Interaction

UniProtKB:P45578

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:15690043

IPI: Inferred from Physical Interaction

UniProtKB:P69924

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16139413

IPI: Inferred from Physical Interaction

UniProtKB:P21513

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P00634

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P00811

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P0A6Z3

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P0A9Q9

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P0AG80

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P0C0V0

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P10346

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P16700

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P17117

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P28635

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P30011

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P36677

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P37024

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P37685

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P46853

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P62623

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P68919

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P69822

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:P76002

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:Q46796

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005515

protein binding

PMID:16606699

IPI: Inferred from Physical Interaction

UniProtKB:Q46906

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0005737

cytoplasm

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc 12.5 [8]

complete

GO:0005886

plasma membrane

GO_REF:0000004
GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997
SP_KW:KW-1003
SP_SL:SL-0037

C

Seeded from EcoCyc [7]

complete

GO:0006970

response to osmotic stress

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0000910

cytokinesis

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0008270

zinc ion binding

PMID:11985624

IDA: Inferred from Direct Assay

F

complete

GO:0009408

response to heat

PMID:8349564

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner TypePartnerNotesReferencesEvidence

Protein

Subunits of DnaJ/DnaK/GrpE

could be indirect

Protein

htpG

PMID:16606699

Experiment(s):EBI-1135316

Protein

aphA

PMID:15690043

Experiment(s):EBI-890853

Protein

gadA

PMID:15690043

Experiment(s):EBI-883577, EBI-888455, EBI-893820

Protein

grpE

PMID:15690043

Experiment(s):EBI-883577, EBI-881166, EBI-888219, EBI-890853

Protein

lon

PMID:15690043

Experiment(s):EBI-883577

Protein

rplF

PMID:15690043

Experiment(s):EBI-883577

Protein

rplJ

PMID:15690043

Experiment(s):EBI-883577

Protein

rpsB

PMID:15690043

Experiment(s):EBI-883577, EBI-890853

Protein

tufA

PMID:15690043

Experiment(s):EBI-883577, EBI-894882, EBI-890853

Protein

yibA

PMID:15690043

Experiment(s):EBI-883577

Protein

ydcR

PMID:15690043

Experiment(s):EBI-890853

Protein

ydfJ

PMID:15690043

Experiment(s):EBI-890853

Protein

entB

PMID:15690043

Experiment(s):EBI-890853

Protein

fabB

PMID:15690043

Experiment(s):EBI-890853

Protein

hisC

PMID:15690043

Experiment(s):EBI-890853

Protein

hscA

PMID:15690043

Experiment(s):EBI-890853

Protein

narQ

PMID:15690043

Experiment(s):EBI-890853

Protein

pepB

PMID:15690043

Experiment(s):EBI-890853

Protein

proS

PMID:15690043

Experiment(s):EBI-890853

Protein

rplI

PMID:15690043

Experiment(s):EBI-890853

Protein

rplS

PMID:15690043

Experiment(s):EBI-890853

Protein

rpmG

PMID:15690043

Experiment(s):EBI-890853

Protein

sapA

PMID:15690043

Experiment(s):EBI-890853

Protein

tdcG

PMID:15690043

Experiment(s):EBI-890853

Protein

dcuD

PMID:15690043

Experiment(s):EBI-890853

Protein

yihM

PMID:15690043

Experiment(s):EBI-890853

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

CompartmentDescriptionEvidenceSourceNotes

Cytoplasm

PMID:9298646, PMID:1396676, PMID:7783627

EchoLocation:dnaK


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MGKIIGIDLG TTNSCVAIMD GTTPRVLENA EGDRTTPSII AYTQDGETLV GQPAKRQAVT
NPQNTLFAIK RLIGRRFQDE EVQRDVSIMP FKIIAADNGD AWVEVKGQKM APPQISAEVL
KKMKKTAEDY LGEPVTEAVI TVPAYFNDAQ RQATKDAGRI AGLEVKRIIN EPTAAALAYG
LDKGTGNRTI AVYDLGGGTF DISIIEIDEV DGEKTFEVLA TNGDTHLGGE DFDSRLINYL
VEEFKKDQGI DLRNDPLAMQ RLKEAAEKAK IELSSAQQTD VNLPYITADA TGPKHMNIKV
TRAKLESLVE DLVNRSIEPL KVALQDAGLS VSDIDDVILV GGQTRMPMVQ KKVAEFFGKE
PRKDVNPDEA VAIGAAVQGG VLTGDVKDVL LLDVTPLSLG IETMGGVMTT LIAKNTTIPT
KHSQVFSTAE DNQSAVTIHV LQGERKRAAD NKSLGQFNLD GINPAPRGMP QIEVTFDIDA
DGILHVSAKD KNSGKEQKIT IKASSGLNED EIQKMVRDAE ANAEADRKFE ELVQTRNQGD
HLLHSTRKQV EEAGDKLPAD DKTAIESALT ALETALKGED KAAIEAKMQE LAQVSQKLME
IAQQQHAQQQ TAGADASANN AKDDDVVDAE FEEVKDKK
Length

638

Mol. Wt

69.115 kDa

pI

4.7 (calculated)

Extinction coefficient

15,930 - 16,055 (calc based on 7 Y, 1 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

TypeResiduesDescriptionNotesReferences

Initiator Methionine

1

Removed

UniProt:P0A6Y8

Modification Site

453

phosphorylation site at S453

probability greater than 75%

PMID:17938405

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures
  • Representative Escherichia coli K-12 structure:
    2KHO|A
    1-605 of 638 residues (E-value: 4e-316) (Percent Identity: 99.83)
  • Representative homolog:
    1DKX|A ()
    1-219 of 638 residues (E-value: 3e-110) (Percent Identity: 99.54)
  • View the PDB Table for dnaK
Models

View models at:

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Structure figures

Notes

Like other Hsp70 chaperones, dnaK consists of two domains: and N-terminal ATPase domain, a substrate binding domain, and a short DnaJ binding domain[9]. Structures

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource typeSourceNotes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10241-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P0A6Y8

UniProt (EcoliWiki Page)

UniProt:P0A6Y8

PFAM (EcoliWiki Page)

PFAM:PF00012

RefSeq (EcoliWiki Page)

RefSeq:NP_414555


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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

MoleculeOrganism or StrainCellular levelUnitsMediumTemperature °COther (e.g. anaerobic)Growth rateAssay usedNotesReference(s)
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

dnaKJ

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Figure courtesy of RegulonDB

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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gbrowse_img.php?coord=12143..12183&genome=ecoli&name=MG1655&trackset=Gene+DNA_+Protein&width=400&figure=Nterm&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele NameMutationPhenotypeReference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

TypeReferenceNotes

microarray

GEO Profiles:b0014 (EcoliWiki Page)

NCBI GEO profiles for dnaK

microarray

GenExpDB:b0014 (EcoliWiki Page)

Summary of data for dnaK from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource NameResource TypeDescriptionSourceNotes

GFP Fusion

Intergenic region (11706..12211) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ20; Well:E8[10]

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Notes

Accessions Related to dnaK Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10241

EchoBASE (EcoliWiki Page)

EchoBASE:EB0237

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0014

EcoGene (EcoliWiki Page)

EcoGene:EG10241


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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

OrganismHomologs (Statistics)Comments

Anopheles gambiae

  • ENSANGP00000022995 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000007663 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G37910 (score: 1.000; bootstrap: 97%)
  • AT5G09590 (score: 0.570)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000015172 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00030552 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00002010 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000001849 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000013308 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030828-12 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-040425-391 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-041024-1 (score: 0.988)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0215366 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0001220 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21150-PA (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000003717 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000297185 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000007731 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000029223 (score: 0.477)
  • ENSMMUP00000006030 (score: 0.171)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000015137 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Mus musculus

  • MGI:96245 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Oryza gramene

  • Q6Z7L1 (score: 1.000; bootstrap: 99%)
  • Q8GTB0 (score: 0.788)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000029565 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000026696 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YJR045C (score: 1.000; bootstrap: 99%)
  • YEL030W (score: 0.594)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC6641 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000171346 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00034701001 (score: 1.000; bootstrap: 80%)
  • GSTENP00034205001 (score: 0.312)
  • GSTENP00016340001 (score: 0.310)
  • GSTENP00007191001 (score: 0.239)
  • GSTENP00007193001 (score: 0.217)
  • GSTENP00028179001 (score: 0.124)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000018420 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Shigella flexneri

DNAK

From SHIGELLACYC

E. coli O157

DNAK

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

PFAM (EcoliWiki Page)

PFAM:PF00012


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Notes

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 2.20 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  8. ↑ 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 8.11 8.12 8.13 8.14 8.15 8.16 8.17 8.18 8.19 8.20 8.21 8.22 8.23 8.24 8.25 8.26 8.27 8.28 8.29 8.30 8.31 8.32 8.33 8.34 8.35 8.36 8.37 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  9. ↑ Genevaux P et al. (2007) The Hsp70 chaperone machines of Escherichia coli: a paradigm for the repartition of chaperone functions. Mol Microbiol 66: 840-57 PubMed EcoliWiki page
  10. ↑ Zaslaver A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat Methods 3: 623-8 PubMed EcoliWiki page

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