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eutR:On One Page

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Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

eutR

Gene Synonym(s)

yfeG, ECK2432, b2437, JW2430[1][2]

Product Desc.

putative ARAC-type regulatory protein[3][2]

eut operon transcriptional activator, AraC family; concerted induction requires both B12 and ethanolamine; autoregulatory[4]

Product Synonyms(s)

predicted DNA-binding transcriptional regulator[1], B2437[3][1], EutR[3][1], YfeG[3][1]

Function from GO
Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yfeG[3]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(eutR)    Textpresso(eutR)

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Notes

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EutR has been characterized in Salmonella. In Salmonella, overproduction of EutR allows for partial induction by either inducer alone.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

eutR

Mnemonic

Ethanolamine utilization

Synonyms

yfeG, ECK2432, b2437, JW2430[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

StrainMap locationGenome coordinatesGenome browsersSequence links

MG1655

55.01 minutes 

MG1655: 2553204..2552152
gbrowse_img.php?coord=2552152..2553204&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 2560628..2559576
gbrowse_img.php?coord=2559576..2560628&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

BW2952

NC_012759: 2437957..2439009
gbrowse_img.php?coord=2437957..2439009&genome=BW2952&name=NC_012759&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature typeLocationDescription
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

AlleleNt change(s)AA change(s)Phenotype: TypePhenotype: DescriptionReferenceAvailabilityComments

yfeG::Tn5KAN

PMID:12519969

ASAP

At position 273 in Minus orientation, does not contain plasmid pKD46.
ASAP strain name: FB20800

yfeG::Tn5KAN

PMID:12519969

ASAP

At position 273 in Minus orientation, contains plasmid pKD46.
ASAP strain name: FB20801

ΔeutR766::kan

PMID:16738554

CGSC:106178


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

ResourceResource TypeSourceNotes/Reference

Plasmid clone

Shigen

PMID:16769691

Status:

Primer 1:

Primer 2:

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12190

EchoBASE (EcoliWiki Page)

EchoBASE:EB2107

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2437

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C2971

EcoGene (EcoliWiki Page)

EcoGene:EG12190

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YFEG

ASAP (EcoliWikiPage)

ASAP:ABE-0008036


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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YfeG

Synonyms

predicted DNA-binding transcriptional regulator[1], B2437[3][1], EutR[3][1], YfeG[3][1]

Product description

putative ARAC-type regulatory protein[3][2]

eut operon transcriptional activator, AraC family; concerted induction requires both B12 and ethanolamine; autoregulatory[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

QualifierGO IDGO term nameReference(s)Evidence Codewith/fromAspectNotesStatus

GO:0045449

regulation of transcription

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012287

P

Seeded from EcoCyc [5]

complete

GO:0043565

sequence-specific DNA binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000005

F

Seeded from EcoCyc [5]

complete

GO:0006355

regulation of transcription, DNA-dependent

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000005
SP_KW:KW-0805

P

Seeded from EcoCyc [5]

complete

GO:0006350

transcription

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc [5]

complete

GO:0005622

intracellular

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000005

C

Seeded from EcoCyc [5]

complete

GO:0003700

transcription factor activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000005

F

Seeded from EcoCyc [5]

complete

GO:0003677

DNA binding

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR012287
SP_KW:KW-0238

F

Seeded from EcoCyc [5]

complete

GO:0016563

transcription activator activity

F

Seeded from EcoCyc 11.1[2].

required fields missing

GO:0009310

amine catabolic process

P

Seeded from EcoCyc 11.1[2].

required fields missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner TypePartnerNotesReferencesEvidence

Protein

acpS

PMID:16606699

Experiment(s):EBI-1142828

Protein

yfdS

PMID:16606699

Experiment(s):EBI-1142828

Protein

groL

PMID:16606699

Experiment(s):EBI-1142828

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

CompartmentDescriptionEvidenceSourceNotes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MKKTRTANLH HLYHEPLPEN LKLTPKVEVD NVHQRQTTDV YEHALTITAW QQIYDQLHPG
KFHGEFTEIL LDDIQVFREY TGLALRQSCL VWPNSFWFGI PATRGEQGFI GSQCLGSAEI
ATRPGGTEFE LSTPDDYTIL GVVLSEDVIT RQANFLHNPD RVLHMLRNQS ALEVKEQHKA
ALWGFVQQAL ATFCENPENL HQPAVRKVLG DNLLMAMGAM LEEAQPMVTA ESISHQSYRR
LLSRAREYVL ENMSEPVTVL DLCNQLHVSR RTLQNAFHAI LGIGPNAWLK RIRLNAVRRE
LISPWSQSMT VKDAAMQWGF WHLGQFATDY QQLFSEKPSL TLHQRMREWG
Length

350

Mol. Wt

40.159 kDa

pI

6.9 (calculated)

Extinction coefficient

61,420 - 61,920 (calc based on 8 Y, 9 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

TypeResiduesDescriptionNotesReferences
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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures
Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource typeSourceNotes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12190-MONOMER

UniProt (EcoliWiki Page)

UniProt:P36547

PFAM (EcoliWiki Page)

PFAM:PF00165

RefSeq (EcoliWiki Page)

RefSeq:NP_416932


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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

MoleculeOrganism or StrainCellular levelUnitsMediumTemperature °COther (e.g. anaerobic)Growth rateAssay usedNotesReference(s)
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

yfeG

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File:.jpg

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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gbrowse_img.php?coord=2553184..2553224&genome=ecoli&name=MG1655&trackset=Gene+DNA_+Protein+flip&width=400&figure=Nterm&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele NameMutationPhenotypeReference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

TypeReferenceNotes

microarray

GEO Profiles:b2437 (EcoliWiki Page)

NCBI GEO profiles for eutR

microarray

GenExpDB:b2437 (EcoliWiki Page)

Summary of data for eutR from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource NameResource TypeDescriptionSourceNotes

GFP Fusion

Intergenic region (2553125..2553322) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ12; Well:B9[6]

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Notes

Accessions Related to eutR Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12190

EchoBASE (EcoliWiki Page)

EchoBASE:EB2107

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2437

EcoGene (EcoliWiki Page)

EcoGene:EG12190


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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

OrganismHomologs (Statistics)Comments

Shigella flexneri

YFEG

From SHIGELLACYC

E. coli O157

YFEG

From ECOO157CYC

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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

PFAM (EcoliWiki Page)

PFAM:PF00165


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ Zaslaver A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat Methods 3: 623-8 PubMed EcoliWiki page

Categories

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