Try the new EcoliHub and let us know what you'd like to see.
fhuA:Gene
From EcoliWiki
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
fhuA |
|---|---|
| Mnemonic |
Ferric hydroxamate uptake |
| Synonyms |
ECK0149, b0150, JW0146, T1, T5rec, tonA[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
3.61 minutes |
MG1655: 167484..169727 | ||
|
NC_012967: 170326..172569 | ||||
|
W3110 |
|
W3110: 167484..169727 | ||
|
DH10B: 141588..143831 | ||||
|
NC_012759: 167483..169726 | ||||
| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature type | Location | Description |
|---|---|---|
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
Strain DH10B |
W254X |
Nonsynonomous mutation |
This is a SNP in E. coli K-12 Strain DH10B | ||||
|
ΔfhuA (Keio:JW0146) |
deletion |
deletion | |||||
|
fhuA23 | |||||||
|
fhuA2 | |||||||
|
fhuA21 | |||||||
|
fhuA54 | |||||||
|
fhuA27 | |||||||
|
fhuA67 | |||||||
|
fhuA48 | |||||||
|
fhuA49 | |||||||
|
fhuA1 | |||||||
|
fhuA22 | |||||||
|
fhuA24 | |||||||
|
fhuA14 | |||||||
|
fhuA31 | |||||||
|
fhuA61 | |||||||
|
fhuA16 | |||||||
|
fhuA53 | |||||||
|
fhuA13 | |||||||
|
fhuA25 | |||||||
|
fhuA66 | |||||||
|
fhuA32 | |||||||
|
fhuA58 | |||||||
|
fhuA46 | |||||||
|
fhuA57 | |||||||
|
fhuA47 | |||||||
|
fhuA55 | |||||||
|
fhuA50 | |||||||
|
fhuA51 | |||||||
|
fhuA52 | |||||||
|
fhuA12 | |||||||
|
fhuA26 | |||||||
|
fhuA0 | |||||||
|
ΔfhuA766::kan |
| ||||||
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW0146 |
Plasmid clone |
Status:Clone OK Primer 1:GCCGCGCGTTCCAAAACTGCTCA Primer 2:CCGAAACGGAAGGTTGCGGTTGC | |
|
Linked marker |
est. P1 cotransduction: 50% [6] | ||
|
Linked marker |
est. P1 cotransduction: 3% [6] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Durfee T et al. (2008) The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J Bacteriol 190: 2597-606 PubMed EcoliWiki page
- ↑ 3.0 3.1 Baba T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2: 2006.0008 PubMed EcoliWiki page
- ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
- ↑ Kitagawa M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive): Unique Resources for Biological Research. DNA Res 12: 291-9 PubMed EcoliWiki page
- ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
