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free2bind

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Contents

Short Description

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Free software for motif finding/prediction based on free energy calculations. Run as perl scripts to that call the package. Can be used for motif prediction in RNA or DNA and is capable of converting between the two, default is RNA. Primary author Joshua Starmer.

Links

Links to sites that run the software or where it can be obtained

Obtainable on SourceForge

Requirements

Hardware/Software requirements, if applicable

User notes

Usage information and options can be viewed by type the name of the script followed by -h.

$ perl free_align.pl -h    

See Also

References

See Help:References for how to manage references in EcoliWiki. [1]

  1. Starmer, J et al. (2006) Predicting Shine-Dalgarno sequence locations exposes genome annotation errors. PLoS Comput. Biol. 2 e57 PubMed EcoliWiki page