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gfcC:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YmcB

Synonyms

conserved protein[1], B0985[2][1], YmcB[2][1], GfcC[2][1]

Product description

conserved protein[2][3]

Required for formation of the O-antigen capsule; silenced by IS1D insertion in promoter region[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

QualifierGO IDGO term nameReference(s)Evidence Codewith/fromAspectNotesStatus
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner TypePartnerNotesReferencesEvidence
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Notes

Localization

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CompartmentDescriptionEvidenceSourceNotes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MNKLQSYFIA SVLYVMTPHA FAQGTVTIYL PGEQQTLSVG PVENVVQLVT QPQLRDRLWW
PGALLTDSAA KAKALKDYQH VMAQLASWEA EADDDVAATI KSVRQQLLNL NITGRLPVKL
DPDFVRVDEN SNPPLVGDYT LYTVQRPVTI TLLGAVSGAG QLPWQAGRSV TDYLQDHPRL
AGADKNNVMV ITPEGETVVA PVALWNKRHV EPPPGSQLWL GFSAHVLPEK YADLNDQIVS
VLTQRVPD
Length

248

Mol. Wt

27.295 kDa

pI

5.3 (calculated)

Extinction coefficient

44,920 (calc based on 8 Y, 6 W, and C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

TypeResiduesDescriptionNotesReferences

motif

1-22

UniProt Manual:Signal Peptides

UniProt:P75883


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rectanglemotifs

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures
Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource typeSourceNotes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:G6506-MONOMER

UniProt (EcoliWiki Page)

UniProt:P75883

PFAM (EcoliWiki Page)

PFAM:PF06251

RefSeq (EcoliWiki Page)

RefSeq:NP_415505


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

Categories

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