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Standard Name	rapA
Gene Synonym(s)	ECK0060, b0059, JW0058, rapA, yabA, hepA^[1]
Product Desc.	RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor^[2]^[3] RNA polymerase binding protein; mutants are UV-S; mutant biofilms have less polysaccharide and are antibiotic sensitive; ATPase and putative helicase^[4]
Product Synonyms(s)	RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor)^[1], B0059^[2]^[1], YabA^[2]^[1], RapA^[2]^[1], RapA^[2]^[1]
Function from GO
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): rluA^[2], rapA^[2]
Regulation/Activity
Quick Links	DNA display Protein display Pubmed(hepA) Textpresso(hepA)
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Notes

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HepA has sequence similarity to SWI2/SNF2 helicases. hepA is downstream of polB, but is not under lexA control. The mutant phentypes may be indirect since other genes, e.g. yeeZ and aaeA(yhcQ), are downregulated in hepA(rapA) mutants (Lynch, 2007).^[4]

Gene

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Nomenclature

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Standard name	rapA
Mnemonic
Synonyms	ECK0060, b0059, JW0058, rapA, yabA, hepA^[1]
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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	1.3 minutes	MG1655: 63264..60358	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 66068..63162	GBrowse (REL606)	FASTA Dump
W3110		W3110: 63264..60358	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 62378..60358	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type	Location	Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Description	Reference	Availability	Comments
ΔhepA (Keio:JW0058)	deletion	deletion		PMID:16738554	Shigen CGSC8366^[5]
rapAK183A		K183A	Loss of function. Still interacts with RNAP			seeded from UniProt:P60240
rapADE280AA		DE280AA	Loss of function. Still interacts with RNAP			seeded from UniProt:P60240
ΔhepA769::kan				PMID:16738554	CGSC:101346
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Notes

HepA has a plausible function and reasonable map location to be the gene affected by the psu-1 mutation.

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW0058	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCCCTTTTACACTTGGTCAACG Primer 2:CCCTGATGCGTTACAACGATCAA
carB96::Tn10	Linked marker	CAG12093 = CGSC7322^[5]	est. P1 cotransduction: 34% ^[6] Synonyms:car-96::Tn10
leuO3051::Tn10	Linked marker	CAG12095 = CGSC7324^[5]	est. P1 cotransduction: 42% ^[6] Synonyms:zab-3051::Tn10 nnnThe start of leuO was reannotated by Riley et al. (2006).
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:EG11083
EchoBASE (EcoliWiki Page)	EchoBASE:EB1075
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b0059
ECOL199310CYC (EcoliWiki Page)	ECOL199310CYC:C0070
EcoGene (EcoliWiki Page)	EcoGene:EG11083
ECOO157CYC (EcoliWiki Page)	ECOO157CYC:Z0067
CGSC (EcoliWiki Page)	CGSC:29491
ASAP (EcoliWikiPage)	ASAP:ABE-0000198
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

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Standard name	RapA
Synonyms	RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor)^[1], B0059^[2]^[1], YabA^[2]^[1], RapA^[2]^[1], RapA^[2]^[1]
Product description	RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor^[2]^[3] RNA polymerase binding protein; mutants are UV-S; mutant biofilms have less polysaccharide and are antibiotic sensitive; ATPase and putative helicase^[4]
EC number (for enzymes)	3.6.1.-^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0000166	nucleotide binding	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0547	F	Seeded from EcoCyc ^[7]	complete
	GO:0003676	nucleic acid binding	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001650	F	Seeded from EcoCyc ^[7]	complete
	GO:0003677	DNA binding	GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR000330 SP_KW:KW-0238	F	Seeded from EcoCyc ^[7]	complete
	GO:0004386	helicase activity	GO_REF:0000002 GO_REF:0000004 GO_REF:0000020	IEA: Inferred from Electronic Annotation	InterPro:IPR001650 SP_KW:KW-0347 HAMAP:MF_01821	F	Seeded from EcoCyc 12.5 ^[8]	complete
	GO:0005524	ATP binding	GO_REF:0000002 GO_REF:0000002 GO_REF:0000004 GO_REF:0000020	IEA: Inferred from Electronic Annotation	InterPro:IPR000330 InterPro:IPR001650 SP_KW:KW-0067 HAMAP:MF_01821	F	Seeded from EcoCyc 12.5 ^[8]	complete
	GO:0006350	transcription	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0804	P	Seeded from EcoCyc ^[7]	complete
	GO:0006355	regulation of transcription, DNA-dependent	GO_REF:0000004 GO_REF:0000020	IEA: Inferred from Electronic Annotation	SP_KW:KW-0805 HAMAP:MF_01821	P	Seeded from EcoCyc 12.5 ^[8]	complete
	GO:0016787	hydrolase activity	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0378	F	Seeded from EcoCyc ^[7]	complete
	GO:0005737	cytoplasm				C	Seeded from Riley et al 2006 ^[1].	required fields missing
	GO:0009451	RNA modification				P	Seeded from Riley et al 2006 ^[1].	required fields missing
	GO:0006950	response to stress				P	Seeded from EcoCyc 11.1^[3].	required fields missing
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	yfaS	PMID:15690043	Experiment(s):EBI-886894
Protein	nusA	PMID:15690043	Experiment(s):EBI-886894
Protein	rplC	PMID:15690043	Experiment(s):EBI-886894
Protein	rpoA	PMID:15690043	Experiment(s):EBI-886894, EBI-879354, EBI-883271
Protein	rpoB	PMID:15690043	Experiment(s):EBI-886894, EBI-879304
Protein	rpoC	PMID:15690043	Experiment(s):EBI-886894, EBI-879261, EBI-883046, EBI-893152
Protein	rpsE	PMID:15690043	Experiment(s):EBI-886894
Protein	fhiA	PMID:15690043	Experiment(s):EBI-893152
Protein	yfcU	PMID:15690043	Experiment(s):EBI-893152
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Notes

Localization

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Compartment	Description	Evidence	Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence	at EcoCyc MPFTLGQRWI SDTESELGLG TVVAVDARTV TLLFPSTGEN RLYARSDSPV TRVMFNPGDT ITSHDGWQMQ VEEVKEENGL LTYIGTRLDT EESGVALREV FLDSKLVFSK PQDRLFAGQI DRMDRFALRY RARKYSSEQF RMPYSGLRGQ RTSLIPHQLN IAHDVGRRHA PRVLLADEVG LGKTIEAGMI LHQQLLSGAA ERVLIIVPET LQHQWLVEML RRFNLRFALF DDERYAEAQH DAYNPFDTEQ LVICSLDFAR RSKQRLEHLC EAEWDLLVVD EAHHLVWSED APSREYQAIE QLAEHVPGVL LLTATPEQLG MESHFARLRL LDPNRFHDFA QFVEEQKNYR PVADAVAMLL AGNKLSNDEL NMLGEMIGEQ DIEPLLQAAN SDSEDAQSAR QELVSMLMDR HGTSRVLFRN TRNGVKGFPK RELHTIKLPL PTQYQTAIKV SGIMGARKSA EDRARDMLYP ERIYQEFEGD NATWWNFDPR VEWLMGYLTS HRSQKVLVIC AKAATALQLE QVLREREGIR AAVFHEGMSI IERDRAAAWF AEEDTGAQVL LCSEIGSEGR NFQFASHMVM FDLPFNPDLL EQRIGRLDRI GQAHDIQIHV PYLEKTAQSV LVRWYHEGLD AFEHTCPTGR TIYDSVYNDL INYLASPDQT EGFDDLIKNC REQHEALKAQ LEQGRDRLLE IHSNGGEKAQ ALAESIEEQD DDTNLIAFAM NLFDIIGINQ DDRGDNMIVL TPSDHMLVPD FPGLSEDGIT ITFDREVALA REDAQFITWE HPLIRNGLDL ILSGDTGSST ISLLKNKALP VGTLLVELIY VVEAQAPKQL QLNRFLPPTP VRMLLDKNGN NLAAQVEFET FNRQLNAVNR HTGSKLVNAV QQDVHAILQL GEAQIEKSAR ALIDAARNEA DEKLSAELSR LEALRAVNPN IRDDELTAIE SNRQQVMESL DQAGWRLDAL RLIVVTHQ
Length	968
Mol. Wt	109.77 kDa
pI	4.9 (calculated)
Extinction coefficient	94,310 - 95,060 (calc based on 19 Y, 12 W, and 6 C residues)
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Domains/Motifs/Modification Sites

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Type	Residues	Description	Notes	References
Initiator Methionine	1	Removed	UniProt:P60240
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Structure
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Structures

Representative Escherichia coli K12 structure:
3DMQ|A
2-968 of 968 residues (E-value: 0e0) (Percent Identity: 97.52)
View the PDB Table for hepA

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:EG11083-MONOMER
UniProt (EcoliWiki Page)	UniProt:P60240
PFAM (EcoliWiki Page)	PFAM:PF04851
RefSeq (EcoliWiki Page)	RefSeq:NP_414601
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Cellular level	Units	Medium	Temperature °C	Other (e.g. anaerobic)	Growth rate	Assay used	Notes	Reference(s)
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
rluA
hepA
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Figure courtesy of RegulonDB

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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gbrowse_img.php?coord=63244..63284&genome=ecoli&name=MG1655&trackset=Gene+DNA_+Protein+flip&width=400&figure=Nterm&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b0059 (EcoliWiki Page)	NCBI GEO profiles for rapA
microarray	GenExpDB:b0059 (EcoliWiki Page)	Summary of data for hepA from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
	GFP Fusion	Intergenic region (63194..63506) fused to gfpmut2.	OpenBioSystems	GFP fusion described in Zaslaver, et al. Plate:109-AZ08; Well:D6^[9]
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Notes

Accessions Related to rapA Expression

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:EG11083
EchoBASE (EcoliWiki Page)	EchoBASE:EB1075
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b0059
EcoGene (EcoliWiki Page)	EcoGene:EG11083
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000007696 (score: 1.000; bootstrap: 100%) ENSANGP00000026244 (score: 0.260) ENSANGP00000015114 (score: 0.159) ENSANGP00000003358 (score: 0.143) ENSANGP00000017802 (score: 0.139) ENSANGP00000008665 (score: 0.135) ENSANGP00000016886 (score: 0.133) ENSANGP00000008413 (score: 0.128) ENSANGP00000013716 (score: 0.123) ENSANGP00000006590 (score: 0.117) ENSANGP00000011045 (score: 0.113) ENSANGP00000016881 (score: 0.104) ENSANGP00000022335 (score: 0.099) ENSANGP00000010721 (score: 0.091) ENSANGP00000028812 (score: 0.053)	From Inparanoid:20070104
Arabidopsis thaliana	AT2G02090 (score: 1.000; bootstrap: 100%) AT3G12810 (score: 0.208) AT3G57300 (score: 0.180) AT3G06400 (score: 0.168) AT5G18620 (score: 0.164) AT2G13370 (score: 0.157) AT5G19310 (score: 0.154) AT3G06010 (score: 0.152) AT5G66750 (score: 0.147) AT5G44800 (score: 0.143) AT2G25170 (score: 0.141) AT2G28290 (score: 0.140) AT4G31900 (score: 0.130) AT2G46020 (score: 0.124) AT2G44980 (score: 0.123) AT2G18760 (score: 0.110) AT5G63950 (score: 0.098) AT1G03750 (score: 0.095) AT3G54280 (score: 0.092) AT3G19210 (score: 0.091) AT1G11100 (score: 0.082) AT1G61140 (score: 0.074) AT1G02670 (score: 0.070) AT3G16600 (score: 0.064) AT2G40770 (score: 0.064) AT5G07810 (score: 0.062) AT1G08600 (score: 0.056) AT5G22750 (score: 0.054) AT1G48310 (score: 0.050)	From Inparanoid:20070104
Bos taurus	ENSBTAP00000000833 (score: 1.000; bootstrap: 100%) ENSBTAP00000026513 (score: 0.279) ENSBTAP00000008862 (score: 0.121) ENSBTAP00000013708 (score: 0.120) ENSBTAP00000004408 (score: 0.119) ENSBTAP00000018494 (score: 0.119) ENSBTAP00000019624 (score: 0.109) ENSBTAP00000023638 (score: 0.107) ENSBTAP00000021438 (score: 0.106) ENSBTAP00000022692 (score: 0.106) ENSBTAP00000027215 (score: 0.105) ENSBTAP00000019119 (score: 0.104) ENSBTAP00000027796 (score: 0.103) ENSBTAP00000019612 (score: 0.103) ENSBTAP00000002955 (score: 0.103) ENSBTAP00000010688 (score: 0.101) ENSBTAP00000027762 (score: 0.100) ENSBTAP00000026607 (score: 0.090) ENSBTAP00000007848 (score: 0.089) ENSBTAP00000007535 (score: 0.084) ENSBTAP00000020459 (score: 0.083) ENSBTAP00000002973 (score: 0.082) ENSBTAP00000027216 (score: 0.081) ENSBTAP00000009868 (score: 0.081)	From Inparanoid:20070104
Canis familiaris	ENSCAFP00000011930 (score: 1.000; bootstrap: 100%) ENSCAFP00000027555 (score: 0.301) ENSCAFP00000011181 (score: 0.297) ENSCAFP00000013970 (score: 0.247) ENSCAFP00000016310 (score: 0.231) ENSCAFP00000022078 (score: 0.224) ENSCAFP00000013610 (score: 0.219) ENSCAFP00000011426 (score: 0.219) ENSCAFP00000008408 (score: 0.214) ENSCAFP00000010654 (score: 0.200) ENSCAFP00000014754 (score: 0.199) ENSCAFP00000002973 (score: 0.195) ENSCAFP00000025953 (score: 0.194) ENSCAFP00000016192 (score: 0.193) ENSCAFP00000024834 (score: 0.163) ENSCAFP00000009895 (score: 0.156) ENSCAFP00000028919 (score: 0.137) ENSCAFP00000010955 (score: 0.132) ENSCAFP00000009587 (score: 0.127) ENSCAFP00000025260 (score: 0.119) ENSCAFP00000001757 (score: 0.110) ENSCAFP00000006360 (score: 0.098) ENSCAFP00000025411 (score: 0.094) ENSCAFP00000014871 (score: 0.092) ENSCAFP00000013506 (score: 0.083) ENSCAFP00000012193 (score: 0.059) ENSCAFP00000014474 (score: 0.055)	From Inparanoid:20070104
Ciona intestinalis	ENSCINP00000002645 (score: 1.000; bootstrap: 100%) ENSCINP00000009708 (score: 0.214) ENSCINP00000010417 (score: 0.212) ENSCINP00000008494 (score: 0.196) ENSCINP00000012546 (score: 0.195) ENSCINP00000002650 (score: 0.176) ENSCINP00000018745 (score: 0.171) ENSCINP00000015797 (score: 0.169) ENSCINP00000015079 (score: 0.165) ENSCINP00000019402 (score: 0.162) ENSCINP00000006250 (score: 0.156) ENSCINP00000012187 (score: 0.154) ENSCINP00000008024 (score: 0.153) ENSCINP00000018719 (score: 0.148) ENSCINP00000003425 (score: 0.140)	From Inparanoid:20070104
Homo sapiens	ENSP00000239027 (score: 1.000; bootstrap: 100%) ENSP00000283131 (score: 0.265) ENSP00000218157 (score: 0.261) ENSP00000355356 (score: 0.221) ENSP00000343042 (score: 0.212) ENSP00000350720 (score: 0.201) ENSP00000265773 (score: 0.200) ENSP00000307304 (score: 0.194) ENSP00000284049 (score: 0.192) ENSP00000244003 (score: 0.191) ENSP00000219084 (score: 0.186) ENSP00000254086 (score: 0.181) ENSP00000262707 (score: 0.180) ENSP00000351947 (score: 0.173) ENSP00000311700 (score: 0.155) ENSP00000332628 (score: 0.144) ENSP00000262450 (score: 0.144) ENSP00000265899 (score: 0.142) ENSP00000312419 (score: 0.131) ENSP00000265990 (score: 0.117) ENSP00000342402 (score: 0.094) ENSP00000308619 (score: 0.094) ENSP00000296477 (score: 0.087) ENSP00000334675 (score: 0.086) ENSP00000336606 (score: 0.082) ENSP00000262745 (score: 0.080) ENSP00000308944 (score: 0.057) ENSP00000251165 (score: 0.056)	From Inparanoid:20070104
Monodelphis domestica	ENSMODP00000009106 (score: 1.000; bootstrap: 100%) ENSMODP00000002477 (score: 0.198) ENSMODP00000013666 (score: 0.128) ENSMODP00000003332 (score: 0.126) ENSMODP00000003825 (score: 0.125) ENSMODP00000003046 (score: 0.125) ENSMODP00000000470 (score: 0.117) ENSMODP00000020205 (score: 0.115) ENSMODP00000000217 (score: 0.110) ENSMODP00000014850 (score: 0.108) ENSMODP00000007805 (score: 0.107) ENSMODP00000008303 (score: 0.107) ENSMODP00000010556 (score: 0.106) ENSMODP00000023332 (score: 0.105) ENSMODP00000004375 (score: 0.104) ENSMODP00000016479 (score: 0.103) ENSMODP00000016448 (score: 0.103) ENSMODP00000000865 (score: 0.102) ENSMODP00000007713 (score: 0.102) ENSMODP00000024050 (score: 0.098) ENSMODP00000022561 (score: 0.096) ENSMODP00000009322 (score: 0.095) ENSMODP00000007809 (score: 0.095) ENSMODP00000016503 (score: 0.091) ENSMODP00000006928 (score: 0.084) ENSMODP00000024049 (score: 0.084) ENSMODP00000019341 (score: 0.083) ENSMODP00000026570 (score: 0.067) ENSMODP00000006332 (score: 0.065)	From Inparanoid:20070104
Oryza gramene	Q5SML0 (score: 1.000; bootstrap: 100%) Q6YNJ5 (score: 1.000; bootstrap: 100%) Q6YNJ6 (score: 1.000; bootstrap: 100%) Q5NA48 (score: 0.179) Q5JJL5 (score: 0.162) Q7G8Y3 (score: 0.162) Q5WN07 (score: 0.161) Q60EX7 (score: 0.142) Q8W121 (score: 0.138) Q67UT8 (score: 0.133) Q6ZGY4 (score: 0.133) Q53K28 (score: 0.125) Q6RYF0 (score: 0.122) Q8GZN6 (score: 0.121) Q8GSF4 (score: 0.121) Q6RYE3 (score: 0.120) Q655K6 (score: 0.094) Q7XQJ0 (score: 0.093) Q8GSA1 (score: 0.053)	From Inparanoid:20070104
Pan troglodytes	ENSPTRP00000038318 (score: 1.000; bootstrap: 100%) ENSPTRP00000028278 (score: 0.897) ENSPTRP00000017881 (score: 0.365) ENSPTRP00000046804 (score: 0.348) ENSPTRP00000004851 (score: 0.333) ENSPTRP00000013691 (score: 0.326) ENSPTRP00000046873 (score: 0.309) ENSPTRP00000012779 (score: 0.289) ENSPTRP00000029279 (score: 0.278) ENSPTRP00000014854 (score: 0.258) ENSPTRP00000000143 (score: 0.258) ENSPTRP00000046785 (score: 0.252) ENSPTRP00000007828 (score: 0.249) ENSPTRP00000046277 (score: 0.239) ENSPTRP00000023188 (score: 0.219) ENSPTRP00000010392 (score: 0.219) ENSPTRP00000034725 (score: 0.206) ENSPTRP00000009601 (score: 0.204) ENSPTRP00000013848 (score: 0.199) ENSPTRP00000004282 (score: 0.144) ENSPTRP00000004803 (score: 0.138) ENSPTRP00000046096 (score: 0.125) ENSPTRP00000001196 (score: 0.063) ENSPTRP00000025849 (score: 0.061)	From Inparanoid:20070104
Schizosaccharomyces pombe	SPAC20G88c (score: 1.000; bootstrap: 100%) SPCC12355c (score: 0.353) SPAC25A81c (score: 0.312) SPAC29B121 (score: 0.137) SPAC12501 (score: 0.126) SPCC16204c (score: 0.123) SPAC3G61 (score: 0.103) SPBC18261c (score: 0.095) SPAC22F33c (score: 0.068) SPBC5820c (score: 0.064) SPAC15A103c (score: 0.063)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000167031 (score: 1.000; bootstrap: 61%) NEWSINFRUP00000158240 (score: 0.291) NEWSINFRUP00000140570 (score: 0.102) NEWSINFRUP00000139955 (score: 0.094) NEWSINFRUP00000143763 (score: 0.075) NEWSINFRUP00000157064 (score: 0.074) NEWSINFRUP00000172611 (score: 0.065) NEWSINFRUP00000151709 (score: 0.062) NEWSINFRUP00000128848 (score: 0.061) NEWSINFRUP00000160883 (score: 0.060) NEWSINFRUP00000139269 (score: 0.058) NEWSINFRUP00000141439 (score: 0.057) NEWSINFRUP00000136933 (score: 0.056) NEWSINFRUP00000171561 (score: 0.052) NEWSINFRUP00000180874 (score: 0.052) NEWSINFRUP00000137957 (score: 0.051)	From Inparanoid:20070104
Tetraodon nigroviridis	GSTENP00032631001 (score: 1.000; bootstrap: 100%) GSTENP00020705001 (score: 0.182) GSTENP00007885001 (score: 0.170) GSTENP00032856001 (score: 0.165) GSTENP00020327001 (score: 0.157) GSTENP00028558001 (score: 0.151) GSTENP00032466001 (score: 0.150) GSTENP00007355001 (score: 0.149) GSTENP00015134001 (score: 0.147) GSTENP00006740001 (score: 0.145) GSTENP00013647001 (score: 0.135) GSTENP00024354001 (score: 0.134) GSTENP00008602001 (score: 0.132) GSTENP00015321001 (score: 0.121) GSTENP00030634001 (score: 0.117) GSTENP00019136001 (score: 0.113) GSTENP00006554001 (score: 0.107) GSTENP00027402001 (score: 0.084) GSTENP00017033001 (score: 0.074) GSTENP00011456001 (score: 0.061)	From Inparanoid:20070104
Xenopus tropicalis	ENSXETP00000041632 (score: 1.000; bootstrap: 100%) ENSXETP00000046712 (score: 0.186) ENSXETP00000019409 (score: 0.155) ENSXETP00000033470 (score: 0.148) ENSXETP00000003188 (score: 0.147) ENSXETP00000006372 (score: 0.146) ENSXETP00000038157 (score: 0.145) ENSXETP00000020619 (score: 0.145) ENSXETP00000052081 (score: 0.141) ENSXETP00000043540 (score: 0.139) ENSXETP00000037477 (score: 0.137) ENSXETP00000000736 (score: 0.136) ENSXETP00000004361 (score: 0.134) ENSXETP00000051466 (score: 0.129) ENSXETP00000025170 (score: 0.120) ENSXETP00000009818 (score: 0.119) ENSXETP00000032473 (score: 0.094) ENSXETP00000048867 (score: 0.087) ENSXETP00000000131 (score: 0.083) ENSXETP00000009776 (score: 0.079) ENSXETP00000015533 (score: 0.077) ENSXETP00000026599 (score: 0.077) ENSXETP00000004350 (score: 0.075) ENSXETP00000009513 (score: 0.063)	From Inparanoid:20070104
Shigella flexneri	HEPA	From SHIGELLACYC
E. coli O157	Z0067	From ECOO157CYC
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Database	Accession	Notes
PFAM (EcoliWiki Page)	PFAM:PF04851
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↑ ^1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 ^1.11 ^1.12 ^1.13 ^1.14 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 ^2.11 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
↑ ^7.0 ^7.1 ^7.2 ^7.3 ^7.4 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
↑ ^8.0 ^8.1 ^8.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ Zaslaver A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat Methods 3: 623-8 PubMed EcoliWiki page

rapA:On One Page

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