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hscB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

HscB

Synonyms

DnaJ-like molecular chaperone specific for IscU[1], B2527[2][1], YfhE[2][1], HscB[2][1], Hsc20[2][1]

Product description

Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly[2][3]

Hsc20, DnaJ-like co-chaperone for HscA; specific for IscU[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

QualifierGO IDGO term nameReference(s)Evidence Codewith/fromAspectNotesStatus
GO:0005515

protein binding

PMID:16606699[5]

IPI: Inferred from Physical Interaction

UniProtKB:P15288

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0005515

protein binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009073

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0006457

protein folding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR004640
InterPro:IPR009073
HAMAP:MF_00682

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0031072

heat shock protein binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001623

F

Seeded from EcoCyc [7]

complete

GO:0051087

chaperone binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004640

F

Seeded from EcoCyc [7]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner TypePartnerNotesReferencesEvidence

Protein

clpB

PMID:15690043[8]

Experiment(s):EBI-889252

Protein

rpoC

PMID:15690043[8]

Experiment(s):EBI-889252

Protein

tufA

PMID:15690043[8]

Experiment(s):EBI-889252, EBI-894305

Protein

htpG

PMID:15690043[8]

Experiment(s):EBI-894305

Protein

rplA

PMID:15690043[8]

Experiment(s):EBI-894305

Protein

rplJ

PMID:15690043[8]

Experiment(s):EBI-894305

Protein

rplK

PMID:15690043[8]

Experiment(s):EBI-894305

Protein

rplL

PMID:15690043[8]

Experiment(s):EBI-894305

Protein

rpmC

PMID:15690043[8]

Experiment(s):EBI-894305

Protein

rpmG

PMID:15690043[8]

Experiment(s):EBI-894305

Protein

rpsB

PMID:15690043[8]

Experiment(s):EBI-894305

Protein

rpsG

PMID:15690043[8]

Experiment(s):EBI-894305

Protein

rpsN

PMID:15690043[8]

Experiment(s):EBI-894305

Protein

ugpB

PMID:15690043[8]

Experiment(s):EBI-894305

Protein

dcuD

PMID:15690043[8]

Experiment(s):EBI-894305

Protein

pepD

PMID:16606699[5]

Experiment(s):EBI-1143149

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

CompartmentDescriptionEvidenceSourceNotes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MDYFTLFGLP ARYQLDTQAL SLRFQDLQRQ YHPDKFASGS QAEQLAAVQQ SATINQAWQT
LRHPLMRAEY LLSLHGFDLA SEQHTVRDTA FLMEQLELRE ELDEIEQAKD EARLESFIKR
VKKMFDTRHQ LMVEQLDNET WDAAADTVRK LRFLDKLRSS AEQLEEKLLD F
Length

171

Mol. Wt

20.137 kDa

pI

4.9 (calculated)

Extinction coefficient

16,960 (calc based on 4 Y, 2 W, and C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

TypeResiduesDescriptionNotesReferences
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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures
Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource typeSourceNotes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12131-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0A6L9

PFAM (EcoliWiki Page)

PFAM:PF00226

RefSeq (EcoliWiki Page)

RefSeq:NP_417022


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res 16: 686-91 PubMed EcoliWiki page
  6. ↑ 6.0 6.1 6.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  8. ↑ 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 8.11 8.12 8.13 8.14 Butland G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433: 531-7 PubMed EcoliWiki page

Categories

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