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nrdR:Gene

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Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

nrdR

Mnemonic

Nucleotide reductase

Synonyms

ybaD, ECK0407, b0413, JW0403[1][2]

Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

StrainMap locationGenome coordinatesGenome browsersSequence links

MG1655

9.32 minutes 

MG1655: 432226..432675
gbrowse_img.php?coord=432226..432675&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 432226..432675
gbrowse_img.php?coord=432226..432675&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 371557..372006
gbrowse_img.php?coord=371557..372006&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

BW2952

NC_012759: 334985..335434
gbrowse_img.php?coord=334985..335434&genome=BW2952&name=NC_012759&trackset=0&width=300&.png

Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature typeLocationDescription

Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

AlleleNt change(s)AA change(s)Phenotype: TypePhenotype: DescriptionReferenceAvailabilityComments

ΔnrdR775::kan

PMID:16738554[3]

CGSC:106262


Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

ResourceResource TypeSourceNotes/Reference

Plasmid clone

Shigen

PMID:16769691[4]

Status:

Primer 1:

Primer 2:

Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11320

EchoBASE (EcoliWiki Page)

EchoBASE:EB1296

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0413

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C0523

EcoGene (EcoliWiki Page)

EcoGene:EG11320

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YBAD

ASAP (EcoliWikiPage)

ASAP:ABE-0001437


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. Baba T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2: 2006.0008 PubMed EcoliWiki page
  4. Kitagawa M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive): Unique Resources for Biological Research. DNA Res 12: 291-9 PubMed EcoliWiki page

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