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pnp:Gene Product(s)
From EcoliWiki
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
| Standard name |
Pnp |
|---|---|
| Synonyms |
polynucleotide phosphorylase/polyadenylase[1], B3164[2][1], Bfl[2][1], Pnp[2][1], polynucleotide phosphorylase[2][1] |
| Product description |
Component of ; polynucleotide phosphorylase[3]; degradosome[3] |
| EC number (for enzymes) | |
| edit table |
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0016740 |
transferase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0016779 |
nucleotidyltransferase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0016020 |
membrane |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0006950 |
response to stress |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0006402 |
mRNA catabolic process |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0006396 |
RNA processing |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0005737 |
cytoplasm |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0004654 |
polyribonucleotide nucleotidyltransferase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0003723 |
RNA binding |
GO_REF:0000002 |
IEA: Inferred from Electronic Annotation |
InterPro:IPR001247 |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |
| GO:0000175 |
3'-5'-exoribonuclease activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0005624 |
membrane fraction |
IDA: Inferred from Direct Assay |
C |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0006401 |
RNA catabolic process |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| edit table |
Interactions
| Partner Type | Partner | Notes | References |
|---|---|---|---|
|
Protein |
Subunits of polynucleotide phosphorylase |
could be indirect | |
|
Protein |
Subunits of degradosome |
could be indirect |
|
| edit table |
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Notes
Localization
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Notes
Structure and Physical Properties
Physical Properties
| Sequence |
MRRRSGINTS AVRYCLRKRK DITLLNPIVR KFQYGQHTVT LETGMMARQA TAAVMVSMDD TAVFVTVVGQ KKAKPGQDFF PLTVNYQERT YAAGRIPGSF FRREGRPSEG ETLIARLIDR PIRPLFPEGF VNEVQVIATV VSVNPQVNPD IVAMIGASAA LSLSGIPFNG PIGAARVGYI NDQYVLNPTQ DELKESKLDL VVAGTEAAVL MVESEAQLLS EDQMLGAVVF GHEQQQVVIQ NINELVKEAG KPRWDWQPEP VNEALNARVA ALAEARLSDA YRITDKQERY AQVDVIKSET IATLLAEDET LDENELGEIL HAIEKNVVRS RVLAGEPRID GREKDMIRGL DVRTGVLPRT HGSALFTRGE TQALVTATLG TARDAQVLDE LMGERTDTFL FHYNFPPYSV GETGMVGSPK RREIGHGRLA KRGVLAVMPD MDKFPYTVRV VSEITESNGS SSMASVCGAS LALMDAGVPI KAAVAGIAMG LVKEGDNYVV LSDILGDEDH LGDMDFKVAG SRDGISALQM DIKIEGITKE IMQVALNQAK GARLHILGVM EQAINAPRGD ISEFAPRIHT IKINPDKIKD VIGKGGSVIR ALTEETGTTI EIEDDGTVKI AATDGEKAKH AIRRIEEITA EIEVGRVYTG KVTRIVDFGA FVAIGGGKEG LVHISQIADK RVEKVTDYLQ MGQEVPVKVL EVDRQGRIRL SIKEATEQSQ PAAAPEAPAA EQGE |
|---|---|
| Mol. Wt |
79.85 kDa (calc) [2] |
| pI | |
| Extinction coefficient |
31860 - 32110 (calc based on 14 Y, 2 W, and 2 C residues) |
| edit table |
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Domains/Motifs/Modification Sites
| Type | Residues | Description | Notes |
|---|---|---|---|
|
Domain |
553 - 612 | ||
|
Domain |
622 - 690 | ||
| edit table |
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
Structure
| Structures |
|
|---|---|
| Models |
View models at: |
| edit table |
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
Notes
Gene Product Resources
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Notes
Accessions in Other Databases
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Lasserre JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27: 3306-21 PubMed EcoliWiki page
Categories
Categories: GO:0016740 ! transferase activity | GO:0016779 ! nucleotidyltransferase activity | GO:0016020 ! membrane | GO:0006950 ! response to stress | GO:0006402 ! mRNA catabolic process | GO:0006396 ! RNA processing | GO:0005737 ! cytoplasm | GO:0004654 ! polyribonucleotide nucleotidyltransferase activity | GO:0003723 ! RNA binding | GO:0000175 ! 3'-5'-exoribonuclease activity | GO:0005624 ! membrane fraction | GO:0006401 ! RNA catabolic process | Proteins | Complex:polynucleotide phosphorylase | Complex:degradosome | Products with structures in PDB
