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prfA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

PrfA

Synonyms

peptide chain release factor RF-1[1], B1211[2][1], Uar[2][1], SueB[2][1], PrfA[2][1]

Product description

peptide chain release factor RF1[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

QualifierGO IDGO term nameReference(s)Evidence Codewith/fromAspectNotesStatus
GO:0016149

translation release factor activity, codon specific

GO_REF:0000002
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR004373
HAMAP:MF_00093

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0006415

translational termination

GO_REF:0000002
GO_REF:0000002
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR000352
InterPro:IPR004373
HAMAP:MF_00093

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006412

translation

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0648

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0005737

cytoplasm

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR004373
SP_KW:KW-0963

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0003747

translation release factor activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000352

F

Seeded from EcoCyc 12.5 [4]

complete

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Interactions

Partner TypePartnerNotesReferences
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Notes

Localization

CompartmentDescriptionEvidenceNotes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MKPSIVAKLE ALHERHEEVQ ALLGDAQTIA DQERFRALSR EYAQLSDVSR CFTDWQQVQE
DIETAQMMLD DPEMREMAQD ELREAKEKSE QLEQQLQVLL LPKDPDDERN AFLEVRAGTG
GDEAALFAGD LFRMYSRYAE ARRWRVEIMS ASEGEHGGYK EIIAKISGDG VYGRLKFESG
GHRVQRVPAT ESQGRIHTSA CTVAVMPELP DAELPDINPA DLRIDTFRSS GAGGQHVNTT
DSAIRITHLP TGIVVECQDE RSQHKNKAKA LSVLGARIHA AEMAKRQQAE ASTRRNLLGS
GDRSDRNRTY NFPQGRVTDH RINLTLYRLD EVMEGKLDML IEPIIQEHQA DQLAALSEQE
Mol. Wt

40.52 kDa (calc) [2]

pI
Extinction coefficient

21430 - 21805 (calc based on 7 Y, 2 W, and 3 C residues)

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Domains/Motifs/Modification Sites

TypeResiduesDescriptionNotes

Modification Site

235

N5-methylglutamine

UniProt:P0A7I0

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Structure

Structures
  • Representative Escherichia coli structure:
    2B3T|B
    1-360 of 360 residues (E-value: 4.5e-190) (Percent Identity: 99.72)
  • Representative homolog:
    1RQ0|A (Thermotoga maritima)
    1-326 of 360 residues (E-value: 2.2e-78) (Percent Identity: 46.18)
  • View all other structures.
Models

View models at:

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Notes

Gene Product Resources

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Resource typeSourceNotes/Reference
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Notes

Accessions in Other Databases

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DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10761-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P0A7I0

UniProt (EcoliWiki Page)

UniProt:P0A7I0

PFAM (EcoliWiki Page)

PFAM:PF03462

RefSeq (EcoliWiki Page)

RefSeq:NP_415729

ModBase (EcoliWiki Page)

ModBase:P0A7I0

PDB (EcoliWiki Page)

PDB:2B3T


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Notes

Links

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NameURLComments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 4.3 4.4 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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