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ribF:Gene Product(s)
From EcoliWiki
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
RibF |
|---|---|
| Synonyms |
bifunctional riboflavin kinase and FAD synthetase[1], B0025[2][1], YaaC[2][1], RibF[2][1] |
| Product description |
RIBF[2]; bifunctional riboflavin kinase / FMN adenylyltransferase[3] Riboflavin kinase and FAD synthase, riboflavin biosynthesis[4] |
| EC number (for enzymes) | |
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0003919 |
FMN adenylyltransferase activity |
IGI: Inferred from Genetic Interaction |
F |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded from EcoCyc [8] |
complete | |||
| GO:0008531 |
riboflavin kinase activity |
IGI: Inferred from Genetic Interaction |
F |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0009231 |
riboflavin biosynthetic process |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [8] |
complete | |||
| GO:0008531 |
riboflavin kinase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0003919 |
FMN adenylyltransferase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0005737 |
cytoplasm |
C |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0003824 |
catalytic activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [8] |
complete | |||
| GO:0016740 |
transferase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [8] |
complete | |||
| GO:0016779 |
nucleotidyltransferase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [8] |
complete | |||
| GO:0006747 |
FAD biosynthetic process |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0009398 |
FMN biosynthetic process |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0003919 |
FMN adenylyltransferase activity |
IGI |
F |
Seeded from EcoCyc 11.1[3]. |
required fields missing | |||
| GO:0008531 |
riboflavin kinase activity |
IGI |
F |
Seeded from EcoCyc 11.1[3]. |
required fields missing | |||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Experiment(s):EBI-1135327 | |||
|
Protein |
Experiment(s):EBI-1135327 | |||
|
Protein |
Experiment(s):EBI-1135327 | |||
|
Protein |
Experiment(s):EBI-1135327 | |||
|
Protein |
Experiment(s):EBI-1135327 | |||
|
Protein |
Experiment(s):EBI-1135327 | |||
|
Protein |
Experiment(s):EBI-889192 | |||
|
Protein |
Experiment(s):EBI-894280 | |||
|
Protein |
Experiment(s):EBI-894280 | |||
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Source | Notes |
|---|---|---|---|---|
| edit table |
Notes
Structure and Physical Properties
Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MKLIRGIHNL SQAPQEGCVL TIGNFDGVHR GHRALLQGLQ EEGRKRNLPV MVMLFEPQPL ELFATDKAPA RLTRLREKLR YLAECGVDYV LCVRFDRRFA ALTAQNFISD LLVKHLRVKF LAVGDDFRFG AGREGDFLLL QKAGMEYGFD ITSTQTFCEG GVRISSTAVR QALADDNLAL AESLLGHPFA ISGRVVHGDE LGRTIGFPTA NVPLRRQVSP VKGVYAVEVL GLGEKPLPGV ANIGTRPTVA GIRQQLEVHL LDVAMDLYGR HIQVVLRKKI RNEQRFASLD ELKAQIARDE LTAREFFGLT KPA |
|---|---|
| Length |
313 |
| Mol. Wt |
34.734 kDa |
| pI |
9.6 (calculated) |
| Extinction coefficient |
7,450 - 7,950 (calc based on 5 Y, W, and 4 C residues) |
| edit table |
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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Structure
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Structure figures
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| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 5.3 Mack M et al. (1998) Regulation of riboflavin biosynthesis in Bacillus subtilis is affected by the activity of the flavokinase/flavin adenine dinucleotide synthetase encoded by ribC. J Bacteriol 180: 950-5 PubMed EcoliWiki page
- ↑ 6.0 6.1 6.2 6.3 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 7.0 7.1 7.2 7.3 Butland G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433: 531-7 PubMed EcoliWiki page
- ↑ 8.0 8.1 8.2 8.3 8.4 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
- ↑ 9.0 9.1 9.2 9.3 9.4 9.5 Arifuzzaman M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res 16: 686-91 PubMed EcoliWiki page
