PortEco logo

rimJ:Gene Product(s)

From EcoliWiki
Jump to: navigation, search


Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RimJ

Synonyms

ribosomal-protein-S5-alanine N-acetyltransferase[1], B1066[2][1], Tcp[2][1], RimJ[2][1] , ECK1051, JW1053, tcp, b1066

Product description

EG10851[2][3]

Modification of 30S ribosomal subunit protein S5; acetylation of N-terminal alanine[4]

EC number (for enzymes)

Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006464

protein modification process

P

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0008080

N-acetyltransferase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000182

F

Seeded from EcoCyc (v14.0)

complete

GO:0008999

ribosomal-protein-alanine N-acetyltransferase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.3.1.128

F

Seeded from EcoCyc (v14.0)

complete

GO:0008999

ribosomal-protein-alanine N-acetyltransferase activity

PMID:385889[5]

IMP: Inferred from Mutant Phenotype

F

Seeded from EcoCyc (v14.0)

complete

GO:0006474

N-terminal protein amino acid acetylation

PMID:385889[5]

IMP: Inferred from Mutant Phenotype

P

complete

GO:0008080

N-acetyltransferase activity

PMID:385889[5]

IMP: Inferred from Mutant Phenotype

F

complete

GO:0008999

ribosomal-protein-alanine N-acetyltransferase activity

PMID:385889[5]

IMP: Inferred from Mutant Phenotype

F

Protein S5

complete

GO:0006464

protein modification process

PMID:385889[5]

IMP: Inferred from Mutant Phenotype

P

complete

GO:0005737

cytoplasm

PMID:385889[5]

IDA: Inferred from Direct Assay

C

complete

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

groL

PMID:16606699[6]

Experiment(s):EBI-1138738

Protein

pflB

PMID:19402753[7]

MALDI(Z-score):26.909711

Protein

rfaD

PMID:19402753[7]

MALDI(Z-score):33.014769

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MFGYRSNVPK VRLTTDRLVV RLVHDRDAWR LADYYAENRH FLKPWEPVRD ESHCYPSGWQ
ARLGMINEFH KQGSAFYFGL FDPDEKEIIG VANFSNVVRG SFHACYLGYS IGQKWQGKGL
MFEALTAAIR YMQRTQHIHR IMANYMPHNK RSGDLLARLG FEKEGYAKDY LLIDGQWRDH
VLTALTTPDW TPGR
Length

194

Mol. Wt

22.687 kDa

pI

9.5 (calculated)

Extinction coefficient

49,390 - 49,640 (calc based on 11 Y, 6 W, and 2 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

82..162

PF00583 Acetyltransferase (GNAT) family

PMID:19920124[8]


rectanglemotifs

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

No results found for a best structure.

Models

View models at:

Structure figures

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129029

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946910

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003622

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A948

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10851

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10851

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946910

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000842

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0844

Escherichia coli str. K-12 substr. MG1655

Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. 5.0 5.1 5.2 5.3 5.4 5.5 Cumberlidge, AG & Isono, K (1979) Ribosomal protein modification in Escherichia coli. I. A mutant lacking the N-terminal acetylation of protein S5 exhibits thermosensitivity. J. Mol. Biol. 131 169-89 PubMed EcoliWiki page
  6. Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed EcoliWiki page
  7. 7.0 7.1 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed EcoliWiki page
  8. Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed EcoliWiki page

Categories

[back to top]