rluF:Gene Product(s) - EcoliWiki
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rluF:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

YjbC

Synonyms

23S rRNA pseudouridine synthase[1], B4022[2][1], RluF[2][1], YjbC[2][1]

Product description

23S rRNA pseudouridine synthase[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

QualifierGO IDGO term nameReference(s)Evidence Codewith/fromAspectNotesStatus
GO:0009982

pseudouridine synthase activity

PMID:11720289[4]

IMP: Inferred from Mutant Phenotype

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0031118

rRNA pseudouridine synthesis

PMID:11720289[4]

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc 12.5 [5]

complete

GO:0009982

pseudouridine synthase activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006145

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0004730

pseudouridylate synthase activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000748

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0003723

RNA binding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000748
InterPro:IPR002942
InterPro:IPR006145
SP_KW:KW-0694

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

required fields missing

GO:0016072

rRNA metabolic process

P

Seeded from EcoCyc 10.6[2].

required fields missing

GO:0009451

RNA modification

P

Seeded from EcoCyc 10.6[2].

required fields missing

GO:0031118

rRNA pseudouridine synthesis

PMID:11720289[4]

IMP

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0009982

pseudouridine synthase activity

PMID:11720289[4]

IMP

F

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions

Partner TypePartnerNotesReferences
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Notes

Localization

CompartmentDescriptionEvidenceNotes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MLPDSSVRLN KYISESGICS RREADRYIEQ GNVFLNGKRA TIGDQVKPGD VVKVNGQLIE
PREAEDLVLI ALNKPVGIVS TTEDGERDNI VDFVNHSKRV FPIGRLDKDS QGLIFLTNHG
DLVNKILRAG NDHEKEYLVT VDKPITEEFI RGMSAGVPIL GTVTKKCKVK KEAPFVFRIT
LVQGLNRQIR RMCEHFGYEV KKLERTRIMN VSLSGIPLGE WRDLTDDELI DLFKLIENSS
SEVKPKAKAK PKTAGIKRPV VKMEKTAEKG GRPASNGKRF TSPGRKKKGR
Mol. Wt

32.48 kDa (calc) [2]

pI
Extinction coefficient

11460 - 11835 (calc based on 4 Y, 1 W, and 3 C residues)

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Domains/Motifs/Modification Sites

TypeResiduesDescriptionNotes

Domain

7 - 72

S4 RNA-binding

UniProt:P32684

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Structure

Structures
  • Representative Escherichia coli structure:
    2GML|A
    13-237 of 290 residues (E-value: 1.4e-115) (Percent Identity: 98.22)
  • Representative homolog:
    1VIO|A (Haemophilus influenzae)
    2-237 of 290 residues (E-value: 4.5e-23) (Percent Identity: 30.71)
  • View all other structures.
Models

View models at:

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Notes

Gene Product Resources

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Resource typeSourceNotes/Reference
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Notes

Accessions in Other Databases

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DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11921-MONOMER

UniProt (EcoliWiki Page)

UniProt:P32684

PFAM (EcoliWiki Page)

PFAM:PF01479

RefSeq (EcoliWiki Page)

RefSeq:NP_418446

ModBase (EcoliWiki Page)

ModBase:P32684

PDB (EcoliWiki Page)

PDB:2GML


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Notes

Links

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NameURLComments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 4.3 Del Campo M et al. (2001) Identification and site of action of the remaining four putative pseudouridine synthases in Escherichia coli. RNA 7: 1603-15 PubMed EcoliWiki page
  5. ↑ 5.0 5.1 5.2 5.3 5.4 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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