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rplT:Gene Product(s)
From EcoliWiki
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
| Standard name |
RplT |
|---|---|
| Synonyms |
50S ribosomal subunit protein L20[1], B1716[2][1], PdzA[2][1], RplT[2][1] |
| Product description |
50S ribosomal subunit protein L20[2][3]; Component of ; 50S ribosomal subunit[3]; ribosome[2][3] |
| EC number (for enzymes) |
|
| edit table |
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0019843 |
rRNA binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0006412 |
translation |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0003735 |
structural constituent of ribosome |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0003723 |
RNA binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0000027 |
ribosomal large subunit assembly and maintenance |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [4] |
complete | |||
| GO:0000900 |
translation repressor activity, nucleic acid binding |
IDA |
F |
Seeded from EcoCyc 11.1[3]. |
required fields missing | |||
| GO:0009281 |
cytosolic ribosome (sensu Bacteria) |
C |
Seeded from EcoCyc 10.6[2]. |
required fields missing | ||||
| GO:0003735 |
structural constituent of ribosome |
IDA |
F |
Seeded from EcoCyc 11.1[3]. |
required fields missing | |||
| GO:0005737 |
cytoplasm |
C |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0009282 |
cytosolic large ribosomal subunit (sensu Bacteria) |
IMP |
C |
Seeded from EcoCyc 11.1[3]. |
required fields missing | |||
| edit table |
Interactions
| Partner Type | Partner | Notes | References |
|---|---|---|---|
|
Protein |
Subunits of 50S ribosomal subunit |
could be indirect | |
|
Protein |
Subunits of ribosome |
could be indirect |
|
| edit table |
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Notes
Localization
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Notes
Structure and Physical Properties
Physical Properties
| Sequence |
MARVKRGVIA RARHKKILKQ AKGYYGARSR VYRVAFQAVI KAGQYAYRDR RQRKRQFRQL WIARINAAAR QNGISYSKFI NGLKKASVEI DRKILADIAV FDKVAFTALV EKAKAALA |
|---|---|
| Mol. Wt |
13.5 kDa (calc) [2] |
| pI | |
| Extinction coefficient |
14440 (calc based on 6 Y, 1 W, and 0 C residues) |
| edit table |
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Domains/Motifs/Modification Sites
| Type | Residues | Description | Notes |
|---|---|---|---|
| edit table |
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
Structure
| Structures |
|
|---|---|
| Models |
View models at: |
| edit table |
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
Notes
Gene Product Resources
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Notes
Accessions in Other Databases
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 4.2 4.3 4.4 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Lesage P et al. (1992) Messenger RNA secondary structure and translational coupling in the Escherichia coli operon encoding translation initiation factor IF3 and the ribosomal proteins, L35 and L20. J Mol Biol 228: 366-86 PubMed EcoliWiki page
- ↑ Nowotny V & Nierhaus KH (1980) Protein L20 from the large subunit of Escherichia coli ribosomes is an assembly protein. J Mol Biol 137: 391-9 PubMed EcoliWiki page
- ↑ Olsson CL et al. (1996) Physiological effects of translation initiation factor IF3 and ribosomal protein L20 limitation in Escherichia coli. Mol Gen Genet 250: 705-14 PubMed EcoliWiki page
Categories
Categories: GO:0019843 ! rRNA binding | GO:0006412 ! translation | GO:0003735 ! structural constituent of ribosome | GO:0003723 ! RNA binding | GO:0000027 ! ribosomal large subunit assembly and maintenance | GO:0000900 ! translation repressor activity, nucleic acid binding | GO:0009281 ! cytosolic ribosome (sensu Bacteria) | GO:0005737 ! cytoplasm | GO:0009282 ! cytosolic large ribosomal subunit (sensu Bacteria) | Proteins | Complex:50S ribosomal subunit | Complex:ribosome
