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rpsC:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

RpsC

Synonyms

30S ribosomal subunit protein S3[1], B3314[2][1], RpsC[2][1]

Product description

30S ribosomal subunit protein S3[2][3];

Component of ; 30S ribosomal subunit[2][3]; ribosome[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

QualifierGO IDGO term nameReference(s)Evidence Codewith/fromAspectNotesStatus
GO:0030529

ribonucleoprotein complex

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0687

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0019843

rRNA binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0699

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0006412

translation

GO_REF:0000002
GO_REF:0000002
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR001351
InterPro:IPR008282
HAMAP:MF_01309

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0005840

ribosome

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001351
InterPro:IPR008282

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0003735

structural constituent of ribosome

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001351
InterPro:IPR008282

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0003723

RNA binding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR004044
InterPro:IPR004087
InterPro:IPR009019
SP_KW:KW-0694

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0022626

cytosolic ribosome

PMID:4587209[5]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc 11.1[3].

complete

GO:0006412

translation

PMID:4579428[6]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc 11.1[3].

complete

GO:0003735

structural constituent of ribosome

PMID:4587209[5]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc 11.1[3].

Data in Figure 1.

complete

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0022627

cytosolic small ribosomal subunit

PMID:4587209[5]

IDA: Inferred from Direct Assay

C

Data in Figure 1.

complete

GO:0019843

rRNA binding

PMID:2459390[7]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc 12.5 [4]

Protection of 16S rRNA from chemical modification and cleavage by nuclease V1. Note: S3 is a tertiary binding protein. It doesn't assemble into 30S ribosomal subunits unless most of the other ribosomal proteins are already bound [8]'/>.

complete

GO:0070181

SSU rRNA binding

PMID:2459390[7]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc 12.5 [4]

Protection of 16S rRNA from chemical modification and cleavage by nuclease V1. Note: S3 is a tertiary binding protein. It doesn't assemble into 30S ribosomal subunits unless most of the other ribosomal proteins are already bound [8]'/>.

complete

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Interactions

Partner TypePartnerNotesReferences

Protein

Subunits of 30S ribosomal subunit

could be indirect

Protein

Subunits of ribosome

could be indirect


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Notes

Localization

CompartmentDescriptionEvidenceNotes

cytoplasm

From EcoCyc[3]

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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MGQKVHPNGI RLGIVKPWNS TWFANTKEFA DNLDSDFKVR QYLTKELAKA SVSRIVIERP
AKSIRVTIHT ARPGIVIGKK GEDVEKLRKV VADIAGVPAQ INIAEVRKPE LDAKLVADSI
TSQLERRVMF RRAMKRAVQN AMRLGAKGIK VEVSGRLGGA EIARTEWYRE GRVPLHTLRA
DIDYNTSEAH TTYGVIGVKV WIFKGEILGG MAAVEQPEKP AAQPKKQQRK GRK
Mol. Wt

25.98 kDa (calc) [2]

pI
Extinction coefficient

27960 (calc based on 4 Y, 4 W, and 0 C residues)

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Domains/Motifs/Modification Sites

TypeResiduesDescriptionNotes

Domain

39 - 107

KH type-2

UniProt:P0A7V3

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Structure

Structures
  • Representative Escherichia coli structure:
    1P6G|C
    1-232 of 233 residues (E-value: 1.1e-120) (Percent Identity: 100.00)
  • Representative homolog:
    1I94|C (Thermus thermophilus)
    1-229 of 233 residues (E-value: 1.6e-59) (Percent Identity: 50.22)
  • View all other structures.
Models

View models at:

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Notes

Gene Product Resources

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Resource typeSourceNotes/Reference
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Notes

Accessions in Other Databases

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DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10902-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0A7V3

PFAM (EcoliWiki Page)

PFAM:PF00417

RefSeq (EcoliWiki Page)

RefSeq:NP_417773


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Notes

Links

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NameURLComments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ 5.0 5.1 5.2 Wittmann-Liebold B (1973) Studies on the primary structure of 20 proteins from Escherichia coli ribosomes by means of an improved protein sequenator. FEBS Lett 36: 247-9 PubMed EcoliWiki page
  6. ↑ Held WA et al. (1973) Reconstitution of Escherichia coli 30 S ribosomal subunits from purified molecular components. J Biol Chem 248: 5720-30 PubMed EcoliWiki page
  7. ↑ 7.0 7.1 Powers T et al. (1988) Probing the assembly of the 3' major domain of 16 S rRNA. Interactions involving ribosomal proteins S2, S3, S10, S13 and S14. J Mol Biol 201: 697-716 PubMed EcoliWiki page
  8. ↑ 8.0 8.1 Mizushima S & Nomura M (1970) Assembly mapping of 30S ribosomal proteins from E. coli. Nature 226: 1214 PubMed EcoliWiki page


Categories

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