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rpsD:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

RpsD

Synonyms

30S ribosomal subunit protein S4[1], B3296[2][1], RamA[2][1], RpsD[2][1]

Product description

30S ribosomal subunit protein S4[2][3];

Component of ; 30S ribosomal subunit[2][3]; ribosome[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

QualifierGO IDGO term nameReference(s)Evidence Codewith/fromAspectNotesStatus
GO:0046677

response to antibiotic

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0046

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0030529

ribonucleoprotein complex

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR001912
SP_KW:KW-0687

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0019843

rRNA binding

GO_REF:0000002
GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR001912
SP_KW:KW-0699
HAMAP:MF_01306

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0015935

small ribosomal subunit

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005709

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0006417

regulation of translation

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0810

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006412

translation

GO_REF:0000002
GO_REF:0000002
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR001912
InterPro:IPR005709
HAMAP:MF_01306

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006355

regulation of transcription, DNA-dependent

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0805

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006353

transcription termination

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0806

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006350

transcription

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0003735

structural constituent of ribosome

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005709

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0003723

RNA binding

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR002942
SP_KW:KW-0694

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0000900

translation repressor activity, nucleic acid binding

F

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0030371

translation repressor activity

PMID:6445562[5]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc 11.1[3].

complete

GO:0031564

transcription antitermination

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0022627

cytosolic small ribosomal subunit

PMID:4587209[6]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc 11.1[3].

Data in Figure 1.

complete

GO:0006412

translation

PMID:4579428[7]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc 11.1[3].

complete

GO:0003735

structural constituent of ribosome

PMID:4587209[6]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc 11.1[3].

complete

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0022626

cytosolic ribosome

C

required field missing

GO:0019843

rRNA binding

PMID:4912319[8]

IDA: Inferred from Direct Assay

F

complete

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Interactions

Partner TypePartnerNotesReferences

Protein

Subunits of 30S ribosomal subunit

could be indirect

Protein

Subunits of ribosome

could be indirect


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Notes

Localization

CompartmentDescriptionEvidenceNotes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MARYLGPKLK LSRREGTDLF LKSGVRAIDT KCKIEQAPGQ HGARKPRLSD YGVQLREKQK
VRRIYGVLER QFRNYYKEAA RLKGNTGENL LALLEGRLDN VVYRMGFGAT RAEARQLVSH
KAIMVNGRVV NIASYQVSPN DVVSIREKAK KQSRVKAALE LAEQREKPTW LEVDAGKMEG
TFKRKPERSD LSADINEHLI VELYSK
Mol. Wt

23.47 kDa (calc) [2]

pI
Extinction coefficient

17420 - 17545 (calc based on 8 Y, 1 W, and 1 C residues)

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Domains/Motifs/Modification Sites

TypeResiduesDescriptionNotes

Domain

96 - 156

S4 RNA-binding

UniProt:P0A7V8

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Structure

Structures
  • Representative Escherichia coli structure:
    1P6G|D
    1-205 of 206 residues (E-value: 2.7e-105) (Percent Identity: 100.00)
  • Representative homolog:
    3BBN|D (Spinacia oleracea)
    1-199 of 206 residues (E-value: 1.1e-30) (Percent Identity: 36.41)
  • View all other structures.
Models

View models at:

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Notes

Gene Product Resources

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Resource typeSourceNotes/Reference
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Notes

Accessions in Other Databases

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DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10903-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0A7V8

PFAM (EcoliWiki Page)

PFAM:PF00163

RefSeq (EcoliWiki Page)

RefSeq:NP_417755


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Notes

Links

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NameURLComments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ Yates JL et al. (1980) In vitro expression of Escherichia coli ribosomal protein genes: autogenous inhibition of translation. Proc Natl Acad Sci U S A 77: 1837-41 PubMed EcoliWiki page
  6. ↑ 6.0 6.1 Wittmann-Liebold B (1973) Studies on the primary structure of 20 proteins from Escherichia coli ribosomes by means of an improved protein sequenator. FEBS Lett 36: 247-9 PubMed EcoliWiki page
  7. ↑ Held WA et al. (1973) Reconstitution of Escherichia coli 30 S ribosomal subunits from purified molecular components. J Biol Chem 248: 5720-30 PubMed EcoliWiki page
  8. ↑ Mizushima S & Nomura M (1970) Assembly mapping of 30S ribosomal proteins from E. coli. Nature 226: 1214 PubMed EcoliWiki page


Categories

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