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Quickview | Gene | Product(s) | Expression| Evolution | References |

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See Help:Quickview for help with entering information in the Quickview table.

Standard Name

rpsL

Gene Synonym(s)

ECK3329, b3342, JW3304, asuB, strA[1]

Product Desc.

30S ribosomal subunit protein S12[2][3];

Component of 30S ribosomal subunit[2][3]; ribosome[2][3]

30S ribosomal subunit protein S12; RNA chaperone[4]

Product Synonyms(s)

30S ribosomal subunit protein S12[1], B3342[2][1], StrA[2][1], AsuB[2][1], RpsL[2][1]

Function from GO

Biological Process

Molecular Function

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rpsLG-fusA-tufA[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(rpsL)    Textpresso(rpsL)

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See Help:Quickview for help with entering information in the Quickview table. RpsL is a ribosomal gene that encodes the highly conserved rps12 protein of the ribosomal accuracy center in the Escherichia coli. Numerous mutations in the rpsL gene generate resistance to, and in some instances dependence on, high levels of streptomycin. [5]

References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Toivonen JM et al. (1999) Modelling in Escherichia coli of mutations in mitoribosomal protein S12: novel mutant phenotypes of rpsL. Mol Microbiol 31: 1735-46 PubMed EcoliWiki page

</noinclude>

Mutations in regions 41-45 (except when lys42 is replaced with arg), 87-93 and 53 result in streptomycin resistance. A point mutation at 262 from A to G sustains protein synthesis in late stationary phase and increases the stability of the 70S complex in low magnesium concentrations.[1]

Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

rpsL

Mnemonic

Ribosomal protein, small

Synonyms

ECK3329, b3342, JW3304, asuB, strA[2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

StrainMap locationGenome coordinatesGenome browsersSequence links

MG1655

74.84 minutes 

MG1655: 3472574..3472200
gbrowse_img.php?coord=3472200..3472574&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 3402457..3402083
gbrowse_img.php?coord=3402083..3402457&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 4165864..4166238
gbrowse_img.php?coord=4165864..4166238&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

BW2952

NC_012759: 3359357..3359731
gbrowse_img.php?coord=3359357..3359731&genome=BW2952&name=NC_012759&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature typeLocationDescription
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

AlleleNt change(s)AA change(s)Phenotype: TypePhenotype: DescriptionReferenceAvailabilityComments

Strain DH10B

K43R

Nonsynonomous mutation

PMID:18245285

ASAP

This is a SNP in E. coli K-12 Strain DH10B

rpsLK43R

K43R

(confers streptomycin resistance but not hyperaccurate translation)

Strain variation; seeded from UniProt:P0A7S3

rpsLL57H

L57H

Protein is not incorporated into ribosomes

seeded from UniProt:P0A7S3

rpsLK88Q

K88Q

Confers low-level resistance to streptomycin and a 15% decrease in the translational elongation rate

seeded from UniProt:P0A7S3

rpsL136(strR)

streptomycin resistant

CGSC:4522

rpsL31(strR)

streptomycin resistant

CGSC:4510

rpsL8

CGSC:4650

rpsL118(strR)

streptomycin resistant

CGSC:4748

rpsL200(strR)

streptomycin resistant

CGSC:4764

rpsL104

CGSC:4888

rpsL109(strR)

streptomycin resistant

CGSC:4933

rpsL151(strR)

streptomycin resistant

CGSC:5028

rpsL195(strR)

streptomycin resistant

CGSC:5051

rpsL134(strR)

streptomycin resistant

CGSC:5092

rpsL175(strR)

streptomycin resistant

CGSC:5097

rpsL153(strR)

streptomycin resistant

CGSC:5174

rpsL67(strR)

streptomycin resistant

CGSC:5230

rpsL135(strR)

streptomycin resistant

CGSC:5280

rpsL125(strR)

streptomycin resistant

CGSC:5300

rpsL155(strR)

streptomycin resistant

CGSC:5385

rpsL150(strR)

streptomycin resistant

CGSC:5414

rpsL100(strR)

streptomycin resistant

CGSC:5475

rpsL181(strR)

streptomycin resistant

CGSC:5536

rpsL178(strR)

streptomycin resistant

CGSC:5550

rpsL172(strR)

streptomycin resistant

CGSC:5578

rpsL173(strR)

streptomycin resistant

CGSC:5587

rpsL223(strR)

streptomycin resistant

CGSC:5720

rpsL129(strR)

streptomycin resistant

CGSC:5773

rpsL99(strR)

streptomycin resistant

CGSC:5785

rpsL14

CGSC:5791

rpsL700(strR)

streptomycin resistant

CGSC:5803

rpsL97(strR)

streptomycin resistant

CGSC:5834

rpsL78(strR)

streptomycin resistant

CGSC:5940

rpsL39(StrD)

streptomycin dependent

CGSC:5991

rpsL101(strR)

streptomycin resistant

CGSC:6009

rpsL45(strR)

streptomycin resistant

CGSC:6053

rpsL265(strR)

streptomycin resistant

CGSC:6113

rpsL704(strR)

streptomycin resistant

CGSC:6176

rpsL186(strR)

streptomycin resistant

CGSC:6191

rpsL17

CGSC:6221

rpsL198(strR)

streptomycin resistant

CGSC:6284

rpsL197(strR)

streptomycin resistant

CGSC:6295

rpsL179(strR)

streptomycin resistant

CGSC:6334

rpsL117(strR)

streptomycin resistant

CGSC:6364

rpsL126(strR)

streptomycin resistant

CGSC:6369

rpsL25(strR)

streptomycin resistant

CGSC:6532

rpsL196(strR)

streptomycin resistant

CGSC:6542

rpsL213(strR)

streptomycin resistant

CGSC:6638

rpsL212(strR)

streptomycin resistant

PMID:1089639 PMID:1094452

CGSC:6642

rpsL124(strR)

streptomycin resistant

CGSC:6646

rpsL214(strR)

streptomycin resistant

CGSC:6650

rpsL228(strR)

streptomycin resistant

CGSC:6694

rpsL231(strR)

streptomycin resistant

CGSC:6741

rpsL999(strR)

streptomycin resistant

CGSC:6885

rpsL254(strR)

streptomycin resistant

CGSC:6967

rpsL255

CGSC:7010

rpsL261(strR)

streptomycin resistant

CGSC:7047

rpsL35(strR)

streptomycin resistant

CGSC:7214

rpsL146(strR)

streptomycin resistant

CGSC:7262

rpsL110(strR)

streptomycin resistant

CGSC:7303

rpsL145(strR)

streptomycin resistant

CGSC:7333

rpsL257(strR)

streptomycin resistant

CGSC:7347

rpsL284(strR)

streptomycin resistant

CGSC:7560

rpsL283(strR)

streptomycin resistant

CGSC:7566

rpsL180(strR)

streptomycin resistant

CGSC:7620

rpsL182(strR)

streptomycin resistant

CGSC:7730

rpsL204(strR)

streptomycin resistant

CGSC:7734

[rpsL203](strR)

streptomycin resistant

CGSC:7741

rpsL160(strR)

streptomycin resistant

CGSC:7844

rpsL140(strR)

streptomycin resistant

CGSC:7859

rpsL149(strR)

streptomycin resistant

CGSC:7933

rpsL157(strR)

streptomycin resistant

CGSC:8004

rpsL115(strR)

streptomycin resistant

CGSC:8089

rpsL20(strR)

streptomycin resistant

CGSC:8208

rpsL62(strR)

streptomycin resistant

CGSC:8248

rpsL201(strR)

streptomycin resistant

CGSC:8302

rpsL192(strR)

streptomycin resistant

CGSC:8303

rpsL190(strR)

streptomycin resistant

CGSC:8304

rpsL194(strR)

streptomycin resistant

CGSC:8305

rpsL193(strR)

streptomycin resistant

CGSC:8306

rpsL56(strR)

streptomycin resistant

CGSC:8334

rpsL171(strR)

streptomycin resistant

CGSC:8424

rpsL230(strR)

streptomycin resistant

CGSC:8538

rpsL273(strR)

streptomycin resistant

CGSC:8781

rpsL132(strR)

streptomycin resistant

CGSC:8811

rpsL174(strR)

streptomycin resistant

CGSC:8902

rpsL159(strR)

streptomycin resistant

CGSC:9102

rpsL27(strR)

streptomycin resistant

CGSC:9123

rpsL138(strR)

streptomycin resistant

CGSC:9352

rpsL69(strR)

streptomycin resistant

CGSC:9428

rpsL71(strR)

streptomycin resistant

CGSC:9433

rpsL24(strR)

streptomycin resistant

CGSC:9606

rpsL281(strR)

streptomycin resistant

CGSC:9729

rpsL263(strR)

streptomycin resistant

CGSC:9830

rpsL185(strR)

streptomycin resistant

CGSC:9848

rpsL260(strR)

streptomycin resistant

CGSC:9860

rpsL154(strR)

streptomycin resistant

CGSC:9873

rpsL120(strR)

streptomycin resistant

CGSC:10167

rpsL264(strR)

streptomycin resistant

CGSC:10251

rpsL268(strR)

streptomycin resistant

CGSC:10815

rpsL127(strR)

streptomycin resistant

CGSC:11128

rpsL16(strR)

streptomycin resistant

CGSC:11152

rpsL712(strR)

streptomycin resistant

CGSC:11323

rpsL60(strR)

streptomycin resistant

CGSC:11361

rpsL106(strR)

streptomycin resistant

CGSC:11512

rpsL123(strR)

streptomycin resistant

CGSC:11573

rpsL144(strR)

streptomycin resistant

CGSC:11592

rpsL183(strR)

streptomycin resistant

CGSC:11845

rpsL133(strR)

streptomycin resistant

CGSC:11867

rpsL229(strR)

streptomycin resistant

CGSC:11911

rpsL227(strR)

streptomycin resistant

CGSC:12062

rpsL218(strR)

streptomycin resistant

CGSC:12069

rpsL217(strR)

streptomycin resistant

CGSC:12072

rpsL253(strR)

streptomycin resistant

CGSC:12147

rpsL272(strR)

streptomycin resistant

CGSC:12213

rpsL275(strR)

streptomycin resistant

CGSC:12892

rpsL252(strR)

streptomycin resistant

CGSC:13113

rpsL18(strR)

streptomycin resistant

CGSC:13175

rpsL38(strR)

streptomycin resistant

CGSC:13182

rpsL23(strR)

streptomycin resistant

CGSC:13214

rpsL112(strR)

streptomycin resistant

CGSC:13220

rpsL40

CGSC:13289

rpsL30(strR)

streptomycin resistant

CGSC:13291

rpsL33(strR)

streptomycin resistant

CGSC:13780

rpsL114(strR)

streptomycin resistant

CGSC:13834

rpsL12(strR)

streptomycin resistant

CGSC:14003

rpsL143(strR)

streptomycin resistant

CGSC:14036

rpsL102(strR)

streptomycin resistant

CGSC:14114

rpsL119(strR)

streptomycin resistant

CGSC:14128

rpsL137(strR)

streptomycin resistant

CGSC:14243

rpsL139(strR)

streptomycin resistant

CGSC:14252

rpsL256(strR)

streptomycin resistant

CGSC:14300

rpsL184(strR)

streptomycin resistant

CGSC:14417

rpsL176(strR)

streptomycin resistant

CGSC:14482

rpsL199(strR)

streptomycin resistant

CGSC:14508

rpsL262(strR)

streptomycin resistant

CGSC:15829

rpsL58(strR)

streptomycin resistant

CGSC:16044

rpsL90(strR)

streptomycin resistant

CGSC:16625

rpsL219(strR)

streptomycin resistant

CGSC:16722

rpsL61(strR)

streptomycin resistant

CGSC:16762

rpsL91(strR)

streptomycin resistant

CGSC:16771

rpsL93(strR)

streptomycin resistant

CGSC:16844

rpsL94(strR)

streptomycin resistant

CGSC:16848

rpsL95(strR)

streptomycin resistant

CGSC:16853

rpsL128(strR)

streptomycin resistant

CGSC:16891

rpsL215(strR)

streptomycin resistant

CGSC:17217

rpsL221(strR)

streptomycin resistant

CGSC:17223

rpsL222(strR)

streptomycin resistant

CGSC:17225

rpsL224(strR)

streptomycin resistant

CGSC:17227

rpsL226(strR)

streptomycin resistant

CGSC:17229

rpsL290(strR)

streptomycin resistant

CGSC:19344

rpsL267(strR)

streptomycin resistant

CGSC:27040

rpsL321

CGSC:66484

rpsL286

CGSC:81241

rpsL9

CGSC:85704


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

ResourceResource TypeSourceNotes/Reference

JW3304

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGCAACAGTTAACCAGCTGGT

Primer 2:CCAGCCTTAGGACGCTTCACGCC

smg-3082::Tn10

Linked marker

CAG12071 = CGSC7444[3]

est. P1 cotransduction: 15% [4]
Synonyms:zhb-3082::Tn10, zhd-3082::Tn10

zhf-3084::Tn10

Linked marker

CAG18456 = CGSC7576[3]

est. P1 cotransduction: 30% [4]
Synonyms:zhe-3084::Tn10nnnCAG18456 also carries cysG0 (CGSC).

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10911

EchoBASE (EcoliWiki Page)

EchoBASE:EB0904

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3342

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C4116

EcoGene (EcoliWiki Page)

EcoGene:EG10911

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:RPSL

CGSC (EcoliWiki Page)

CGSC:220

ASAP (EcoliWikiPage)

ASAP:ABE-0010919


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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RpsL

Synonyms

30S ribosomal subunit protein S12[2], B3342[5][2], StrA[5][2], AsuB[5][2], RpsL[5][2]

Product description

30S ribosomal subunit protein S12[5][6];

Component of 30S ribosomal subunit[5][6]; ribosome[5][6]

30S ribosomal subunit protein S12; RNA chaperone[1]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

QualifierGO IDGO term nameReference(s)Evidence Codewith/fromAspectNotesStatus

GO:0046677

response to antibiotic

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0046

P

Seeded from EcoCyc [7]

complete

GO:0030529

ribonucleoprotein complex

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0687

C

Seeded from EcoCyc [7]

complete

GO:0019843

rRNA binding

GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

SP_KW:KW-0699
HAMAP:MF_00403

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0015935

small ribosomal subunit

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005679

C

Seeded from EcoCyc [7]

complete

GO:0006412

translation

GO_REF:0000002
GO_REF:0000002
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR005679
InterPro:IPR006032
HAMAP:MF_00403

P

Seeded from EcoCyc 12.5 [8]

complete

GO:0005840

ribosome

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006032

C

Seeded from EcoCyc 12.5 [8]

complete

GO:0003735

structural constituent of ribosome

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005679
InterPro:IPR006032

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0003723

RNA binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0694

F

Seeded from EcoCyc 12.5 [8]

complete

GO:0000049

tRNA binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0820

F

Seeded from EcoCyc [7]

complete

GO:0022626

cytosolic ribosome

C

Seeded from EcoCyc 11.1[6].

required field missing

GO:0000372

Group I intron splicing

PMID:7958841

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc [7]

complete

GO:0033120

positive regulation of RNA splicing

PMID:7958841

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc [7]

complete

GO:0034336

misfolded RNA binding

PMID:7958841

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc [7]

complete

GO:0034337

RNA folding

PMID:7958841

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc [7]

complete

GO:0006412

translation

PMID:4579428

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc 11.1[6]. Data in Table IV.

complete

GO:0003735

structural constituent of ribosome

PMID:4587209

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc 11.1[6].

complete

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[6].

required fields missing

GO:0022627

cytosolic small ribosomal subunit

PMID:4587209

IDA: Inferred from Direct Assay

C

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner TypePartnerNotesReferencesEvidence

Protein

Subunits of 30S ribosomal subunit

could be indirect

Protein

ycgL

PMID:16606699

Experiment(s):EBI-1145610

Protein

hns

PMID:16606699

Experiment(s):EBI-1145610

Protein

yedI

PMID:16606699

Experiment(s):EBI-1145610

Protein

rplO

PMID:16606699

Experiment(s):EBI-1145610

Protein

rplA

PMID:16606699

Experiment(s):EBI-1145610

Protein

rpsI

PMID:16606699

Experiment(s):EBI-1145610

Protein

rpsD

PMID:16606699

Experiment(s):EBI-1145610

Protein

cspI

PMID:16606699

Experiment(s):EBI-1145610

Protein

rplB

PMID:16606699

Experiment(s):EBI-1145610

Protein

yedN

PMID:16606699

Experiment(s):EBI-1145610

Protein

Subunits of ribosome

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

CompartmentDescriptionEvidenceSourceNotes

cytoplasm

From EcoCyc[6]


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MATVNQLVRK PRARKVAKSN VPALEACPQK RGVCTRVYTT TPKKPNSALR KVCRVRLTNG
FEVTSYIGGE GHNLQEHSVI LIRGGRVKDL PGVRYHTVRG ALDCSGVKDR KQARSKYGVK RPKA
Length

124

Mol. Wt

13.736 kDa

pI

11.3 (calculated)

Extinction coefficient

5,960 - 6,460 (calc based on 4 Y, W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

TypeResiduesDescriptionNotesReferences

Initiator Methionine

1

Removed

UniProt:P0A7S3


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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures
Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource typeSourceNotes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10911-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0A7S3

PFAM (EcoliWiki Page)

PFAM:PF00164

RefSeq (EcoliWiki Page)

RefSeq:NP_417801


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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

MoleculeOrganism or StrainCellular levelUnitsMediumTemperature °COther (e.g. anaerobic)Growth rateAssay usedNotesReference(s)
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

rpsLG-fusA-tufA

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Figure courtesy of RegulonDB

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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gbrowse_img.php?coord=3472554..3472594&genome=ecoli&name=MG1655&trackset=Gene+DNA_+Protein+flip&width=400&figure=Nterm&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele NameMutationPhenotypeReference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

TypeReferenceNotes

microarray

GEO Profiles:b3342 (EcoliWiki Page)

NCBI GEO profiles for rpsL

microarray

GenExpDB:b3342 (EcoliWiki Page)

Summary of data for rpsL from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource NameResource TypeDescriptionSourceNotes

GFP Fusion

Intergenic region (3472090..3472326) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ19; Well:C1[9]

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Notes

Accessions Related to rpsL Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10911

EchoBASE (EcoliWiki Page)

EchoBASE:EB0904

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3342

EcoGene (EcoliWiki Page)

EcoGene:EG10911


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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

OrganismHomologs (Statistics)Comments

Anopheles gambiae

  • ENSANGP00000024743 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000019954 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G07675 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000002335 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00027993 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00011391 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000008389 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0201603 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0003714 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20693-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000308845 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000015481 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000016799 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1346333 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6ENC0 (score: 1.000; bootstrap: 71%)
  • P12149 (score: 1.000; bootstrap: 67%)
  • P48856 (score: 0.974)
  • Q6L3C7 (score: 0.961)
  • Q6ENU0 (score: 0.961)
  • P12340 (score: 0.961)
  • P24066 (score: 0.803)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000018769 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000027029 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNR036C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC4F86 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000178635 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00008593001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000041624 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPSL

From SHIGELLACYC

E. coli O157

RPSL

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

DatabaseAccessionNotes

PFAM (EcoliWiki Page)

PFAM:PF00164


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Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  3. ↑ 3.0 3.1 CGSC: The Coli Genetics Stock Center
  4. ↑ 4.0 4.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  8. ↑ 8.0 8.1 8.2 8.3 8.4 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  9. ↑ Zaslaver A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat Methods 3: 623-8 PubMed EcoliWiki page

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