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rsmE:Gene Product(s)
From EcoliWiki
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
| Standard name |
YggJ |
|---|---|
| Synonyms | |
| Product description |
16S rRNA m(3)U1498 methyltransferase[2]; 16S rRNA m3U1498 methyltransferase[3] |
| EC number (for enzymes) |
|
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See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0016072 |
rRNA metabolic process |
P |
Seeded from EcoCyc 10.6[2]. |
required fields missing | ||||
| GO:0016740 |
transferase activity |
F |
Seeded from EcoCyc 10.6[2]. |
required fields missing | ||||
| GO:0009451 |
RNA modification |
P |
Seeded from EcoCyc 10.6[2]. |
required fields missing | ||||
| GO:0016436 |
rRNA (uridine) methyltransferase activity |
IDA |
F |
Seeded from EcoCyc 11.1[3]. |
required fields missing | |||
| GO:0031167 |
rRNA methylation |
IMP |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | |||
| edit table |
Interactions
| Partner Type | Partner | Notes | References |
|---|---|---|---|
| edit table |
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Notes
Localization
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Notes
Structure and Physical Properties
Physical Properties
| Sequence |
MGRRRGFLTM RIPRIYHPEP LTSHSHIALC EDAANHIGRV LRMGPGQALQ LFDGSNQVFD AEITSASKKS VEVKVLEGQI DDRESPLHIH LGQVMSRGEK MEFTIQKSIE LGVSLITPLF SERCGVKLDS ERLNKKLQQW QKIAIAACEQ CGRNRVPEIR PAMDLEAWCA EQDEGLKLNL HPRASNSINT LPLPVERVRL LIGPEGGLSA DEIAMTARYQ FTDILLGPRV LRTETTALTA ITALQVRFGD LG |
|---|---|
| Mol. Wt |
26.98 kDa (calc) [2] |
| pI | |
| Extinction coefficient |
13980 - 14605 (calc based on 2 Y, 2 W, and 5 C residues) |
| edit table |
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Domains/Motifs/Modification Sites
| Type | Residues | Description | Notes |
|---|---|---|---|
| edit table |
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
Structure
| Structures |
|
|---|---|
| Models |
View models at: |
| edit table |
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
Notes
Gene Product Resources
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Notes
Accessions in Other Databases
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 Basturea GN et al. (2006) Identification and characterization of RsmE, the founding member of a new RNA base methyltransferase family. RNA 12: 426-34 PubMed EcoliWiki page
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