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surA:Gene Product(s)
From EcoliWiki
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| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
SurA |
|---|---|
| Synonyms |
peptidyl-prolyl cis-trans isomerase (PPIase)[1], B0053[2][1], SurA[2][1] |
| Product description |
peptidyl-prolyl cis-trans isomerase (PPIase)[2][3] Periplasmic OM porin chaperone, has PPIase activity; required for stationary-phase survival[4] |
| EC number (for enzymes) | |
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0051082 |
unfolded protein binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [5] |
complete | |||
| GO:0042597 |
periplasmic space |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc 12.5 [5] |
complete | |||
| GO:0016853 |
isomerase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [6] |
complete | |||
| GO:0006457 |
protein folding |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [5] |
complete | |||
| GO:0003755 |
peptidyl-prolyl cis-trans isomerase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [5] |
complete | |||
| GO:0030288 |
outer membrane-bounded periplasmic space |
C |
Seeded from Riley et al 2006 [1]. |
required fields missing | ||||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded from EcoCyc [6] |
complete | |||
| GO:0042277 |
peptide binding |
PMID:11546789[10] |
IDA: Inferred from Direct Assay |
|
F |
Seeded from EcoCyc [6] |
complete | |
| GO:0042710 |
biofilm formation |
IMP: Inferred from Mutant Phenotype |
P |
Seeded from EcoCyc [6] |
complete | |||
| GO:0043165 |
Gram-negative-bacterium-type cell outer membrane assembly |
IGI: Inferred from Genetic Interaction |
P |
Seeded from EcoCyc [6] |
complete | |||
| GO:0050821 |
protein stabilization |
IMP: Inferred from Mutant Phenotype |
|
P |
Seeded from EcoCyc [6] |
complete | ||
| GO:0051085 |
chaperone cofactor-dependent protein folding |
IMP: Inferred from Mutant Phenotype |
P |
Seeded from EcoCyc [6] |
complete | |||
| GO:0009279 |
cell outer membrane |
C |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0060274 |
maintenance of stationary phase |
IMP: Inferred from Mutant Phenotype |
P |
complete | ||||
| GO:0006457 |
protein folding |
IMP: Inferred from Mutant Phenotype |
P |
complete | ||||
| GO:0050821 |
protein stabilization |
IMP: Inferred from Mutant Phenotype |
P |
complete | ||||
| GO:0003755 |
peptidyl-prolyl cis-trans isomerase activity |
IDA: Inferred from Direct Assay |
F |
complete | ||||
| GO:0043165 |
Gram-negative-bacterium-type cell outer membrane assembly |
IMP: Inferred from Mutant Phenotype |
P |
complete | ||||
| GO:0030288 |
outer membrane-bounded periplasmic space |
IDA: Inferred from Direct Assay |
C |
complete | ||||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Experiment(s):EBI-1135459 | |||
|
Protein |
Experiment(s):EBI-1135459 | |||
|
Protein |
Experiment(s):EBI-891312 | |||
|
Protein |
Experiment(s):EBI-891312 | |||
|
Protein |
Experiment(s):EBI-891312 | |||
|
Protein |
Experiment(s):EBI-891312 | |||
|
Protein |
Experiment(s):EBI-891312 | |||
|
Protein |
Experiment(s):EBI-891312 | |||
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Source | Notes |
|---|---|---|---|---|
|
periplasm | ||||
|
Periplasm |
| |||
| edit table |
Notes
Structure and Physical Properties
Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MKNWKTLLLG IAMIANTSFA APQVVDKVAA VVNNGVVLES DVDGLMQSVK LNAAQARQQL PDDATLRHQI MERLIMDQII LQMGQKMGVK ISDEQLDQAI ANIAKQNNMT LDQMRSRLAY DGLNYNTYRN QIRKEMIISE VRNNEVRRRI TILPQEVESL AQQVGNQNDA STELNLSHIL IPLPENPTSD QVNEAESQAR AIVDQARNGA DFGKLAIAHS ADQQALNGGQ MGWGRIQELP GIFAQALSTA KKGDIVGPIR SGVGFHILKV NDLRGESKNI SVTEVHARHI LLKPSPIMTD EQARVKLEQI AADIKSGKTT FAAAAKEFSQ DPGSANQGGD LGWATPDIFD PAFRDALTRL NKGQMSAPVH SSFGWHLIEL LDTRNVDKTD AAQKDRAYRM LMNRKFSEEA ASWMQEQRAS AYVKILSN |
|---|---|
| Length |
428 |
| Mol. Wt |
47.284 kDa |
| pI |
7.0 (calculated) |
| Extinction coefficient |
34,950 (calc based on 5 Y, 5 W, and C residues) |
| edit table |
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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Structure
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Structure figures
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| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 5.3 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
- ↑ 7.0 7.1 Behrens S et al. (2001) The SurA periplasmic PPIase lacking its parvulin domains functions in vivo and has chaperone activity. EMBO J 20: 285-94 PubMed EcoliWiki page
- ↑ 8.0 8.1 Sklar JG et al. (2007) Defining the roles of the periplasmic chaperones SurA, Skp, and DegP in Escherichia coli. Genes Dev 21: 2473-84 PubMed EcoliWiki page
- ↑ Vuong P et al. (2008) Analysis of YfgL and YaeT interactions through bioinformatics, mutagenesis, and biochemistry. J Bacteriol 190: 1507-17 PubMed EcoliWiki page
- ↑ Webb HM et al. (2001) Interaction of the periplasmic peptidylprolyl cis-trans isomerase SurA with model peptides. The N-terminal region of SurA id essential and sufficient for peptide binding. J Biol Chem 276: 45622-7 PubMed EcoliWiki page
- ↑ Bitto E & McKay DB (2003) The periplasmic molecular chaperone protein SurA binds a peptide motif that is characteristic of integral outer membrane proteins. J Biol Chem 278: 49316-22 PubMed EcoliWiki page
- ↑ Hennecke G et al. (2005) The periplasmic chaperone SurA exploits two features characteristic of integral outer membrane proteins for selective substrate recognition. J Biol Chem 280: 23540-8 PubMed EcoliWiki page
- ↑ Xu X et al. (2007) The periplasmic bacterial molecular chaperone SurA adapts its structure to bind peptides in different conformations to assert a sequence preference for aromatic residues. J Mol Biol 373: 367-81 PubMed EcoliWiki page
- ↑ Alcock FH et al. (2008) Conserved substrate binding by chaperones in the bacterial periplasm and the mitochondrial intermembrane space. Biochem J 409: 377-87 PubMed EcoliWiki page
- ↑ Niba ET et al. (2007) A genome-wide approach to identify the genes involved in biofilm formation in E. coli. DNA Res 14: 237-46 PubMed EcoliWiki page
- ↑ 16.0 16.1 Ureta AR et al. (2007) Kinetic analysis of the assembly of the outer membrane protein LamB in Escherichia coli mutants each lacking a secretion or targeting factor in a different cellular compartment. J Bacteriol 189: 446-54 PubMed EcoliWiki page
- ↑ Tormo A et al. (1990) surA, an Escherichia coli gene essential for survival in stationary phase. J Bacteriol 172: 4339-47 PubMed EcoliWiki page
- ↑ 18.0 18.1 Lazar SW & Kolter R (1996) SurA assists the folding of Escherichia coli outer membrane proteins. J Bacteriol 178: 1770-3 PubMed EcoliWiki page
- ↑ 19.0 19.1 19.2 Rouvière PE & Gross CA (1996) SurA, a periplasmic protein with peptidyl-prolyl isomerase activity, participates in the assembly of outer membrane porins. Genes Dev 10: 3170-82 PubMed EcoliWiki page
- ↑ 20.0 20.1 Arifuzzaman M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res 16: 686-91 PubMed EcoliWiki page
- ↑ 21.0 21.1 21.2 21.3 21.4 21.5 Butland G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433: 531-7 PubMed EcoliWiki page
- ↑ Link AJ et al. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18: 1259-313 PubMed EcoliWiki page

