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yjbF:Gene Product(s)
From EcoliWiki
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
YjbF |
|---|---|
| Synonyms | |
| Product description |
hypothetical protein[2]; predicted lipoprotein[3] Extracellular polysaccharide production, novel lipoprotein[4] |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0016020 |
membrane |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc [5] |
complete | |||
| GO:0045226 |
extracellular polysaccharide biosynthetic process |
IMP |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | |||
| GO:0005886 |
plasma membrane |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-1003 |
C |
Seeded from EcoCyc [5] |
complete | ||
| GO:0045203 |
integral to cell outer membrane |
ISM: Inferred from Sequence Model |
C |
complete | ||||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Source | Notes | |
|---|---|---|---|---|---|
|
Outer membrane | PMID:15174130[8] |
| |||
| edit table |
Notes
Structure and Physical Properties
Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MVILPLWRRV VKRPALILIC LLLQACSATT KELGNSLWDS LFGTPGVQLT DDDIQNMPYA SQYMQLNGGP QLFVVLAFAE DGQQKWVTQD QATLVTQHGR LVKTLLGGDN LIEVNNLAAD PLIKPAQIVD GASWTRTMGW TEYQQVRYAT ARSVFKWDGT DTVKVGSDET PVRVLDEEVS TDQARWHNRY WIDSEGQIRQ SEQYLGADYF PVKTTLIKAA KQ |
|---|---|
| Length |
222 |
| Mol. Wt |
24.986 kDa |
| pI |
5.1 (calculated) |
| Extinction coefficient |
54,430 - 54,680 (calc based on 7 Y, 8 W, and 2 C residues) |
| edit table |
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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Structure
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Structure figures
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| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
- ↑ 6.0 6.1 Ferrieres L et al. (2007) The yjbEFGH locus in Escherichia coli K-12 is an operon encoding proteins involved in exopolysaccharide production. Microbiology 153: 1070-80 PubMed EcoliWiki page
- ↑ Zhai Y & Saier MH Jr (2002) The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Protein Sci 11: 2196-207 PubMed EcoliWiki page
- ↑ Gonnet P et al. (2004) Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Proteomics 4: 1597-613 PubMed EcoliWiki page
